hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09463702/chunk_1/iprscan-20080502-09463702.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0672 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03114.8.ls BAR domain 300.0 4.1e-87 1 PF03114.8.fs BAR domain 298.0 1.6e-86 1 PF00620.17.fs RhoGAP domain 208.6 3.1e-61 1 PF00620.17.ls RhoGAP domain 210.5 3.6e-60 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03114.8.fs 1/1 7 248 .. 1 264 [] 298.0 1.6e-86 PF03114.8.ls 1/1 7 248 .. 1 264 [] 300.0 4.1e-87 PF00620.17.fs 1/1 275 425 .. 1 155 [] 208.6 3.1e-61 PF00620.17.ls 1/1 275 425 .. 1 155 [] 210.5 3.6e-60 Alignments of top-scoring domains: PF03114.8.fs: domain 1 of 1, from 7 to 248: score 298.0, E = 1.6e-86 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv +kKq fnR+ ql++++vG+aekT+vL+ed+++ e+r++ +++ KIAA0672 7 MKKQ----FNRMRQLANQTVGRAEKTEVLSEDLLQVEKRLELVKQVS 49 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm ++ +k+++++lq++++a a ++ ++++P+t+La+++ KIAA0672 50 HSTHKKLTACLQGQQGAEADKR---------------SKKLPLTTLAQCL 84 qeigeelgddsedPfGkaLekygeamkqlaqlleqldervkqnfldPltn +e ++ lgdd++ +Gk+L+ +ge++++laq+l++++ +v++++++Pl KIAA0672 85 MEGSAILGDDTL--LGKMLKLCGETEDKLAQELIHFELQVERDVIEPLFL 132 llekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklakA l+e e+++iqk++k+l ++LD+D++rtr++ +t+ks+ +++ ++a+A KIAA0672 133 LAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQ--QTSKSSGLSSSLQPAGA 180 ..dqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaql + d+l eE+++A + +E ++++L +++++++++e+++ n++q+++e q+ KIAA0672 181 kaDALREEMEEAANRVEICRDQLSADMYSFVAKEIDYA-NYFQTLIEVQA 229 dfhrqsaqlleqlqqqLdk<-* ++hr+s++ll+ + +q + KIAA0672 230 EYHRKSLTLLQAVLPQIKA 248 PF03114.8.ls: domain 1 of 1, from 7 to 248: score 300.0, E = 4.1e-87 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv +kKq fnR+ ql++++vG+aekT+vL+ed+++ e+r++ +++ KIAA0672 7 MKKQ----FNRMRQLANQTVGRAEKTEVLSEDLLQVEKRLELVKQVS 49 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm ++ +k+++++lq++++a a ++ ++++P+t+La+++ KIAA0672 50 HSTHKKLTACLQGQQGAEADKR---------------SKKLPLTTLAQCL 84 qeigeelgddsedPfGkaLekygeamkqlaqlleqldervkqnfldPltn +e ++ lgdd++ +Gk+L+ +ge++++laq+l++++ +v++++++Pl KIAA0672 85 MEGSAILGDDTL--LGKMLKLCGETEDKLAQELIHFELQVERDVIEPLFL 132 llekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklakA l+e e+++iqk++k+l ++LD+D++rtr++ +t+ks+ +++ ++a+A KIAA0672 133 LAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQ--QTSKSSGLSSSLQPAGA 180 ..dqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaql + d+l eE+++A + +E ++++L +++++++++e+++ n++q+++e q+ KIAA0672 181 kaDALREEMEEAANRVEICRDQLSADMYSFVAKEIDYA-NYFQTLIEVQA 229 dfhrqsaqlleqlqqqLdk<-* ++hr+s++ll+ + +q + KIAA0672 230 EYHRKSLTLLQAVLPQIKA 248 PF00620.17.fs: domain 1 of 1, from 275 to 425: score 208.6, E = 3.1e-61 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln +++e C+ l + G+++EG++Rv s+s++k+L++a+d++ +++ KIAA0672 275 AFPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDCCVVDV-- 319 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea + d+h++A++LK +LReLPePL+tfely+e+i a + ++ + +l+a KIAA0672 320 QEYSADPHAIAGALKSYLRELPEPLMTFELYDEWIQ-ASNVQEQDKKLQA 368 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr l +++kLP+aN++ ryL+++L++ +++ +vNkMt++N Aiv gP+Ll+ KIAA0672 369 LWNACEKLPKANHNNIRYLIKFLSKLSEYQDVNKMTPSNMAIVLGPNLLW 418 ppdgdsad<-* p+++ ++ KIAA0672 419 PQAE-GNI 425 PF00620.17.ls: domain 1 of 1, from 275 to 425: score 210.5, E = 3.6e-60 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln +++e C+ l + G+++EG++Rv s+s++k+L++a+d++ +++ KIAA0672 275 AFPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDCCVVDV-- 319 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea + d+h++A++LK +LReLPePL+tfely+e+i a + ++ + +l+a KIAA0672 320 QEYSADPHAIAGALKSYLRELPEPLMTFELYDEWIQ-ASNVQEQDKKLQA 368 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr l +++kLP+aN++ ryL+++L++ +++ +vNkMt++N Aiv gP+Ll+ KIAA0672 369 LWNACEKLPKANHNNIRYLIKFLSKLSEYQDVNKMTPSNMAIVLGPNLLW 418 ppdgdsad<-* p+++ ++ KIAA0672 419 PQAE-GNI 425 //