hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09450011/chunk_1/iprscan-20080502-09450011.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0671 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07525.6.fs SOCS box 60.8 9.6e-18 1 PF07525.6.ls SOCS box 62.7 1.1e-15 1 PF00017.14.fs SH2 domain 25.2 3.5e-08 1 PF00017.14.ls SH2 domain 17.3 0.00014 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00017.14.fs 1/1 383 433 .. 1 58 [. 25.2 3.5e-08 PF00017.14.ls 1/1 383 460 .. 1 82 [] 17.3 0.00014 PF07525.6.fs 1/1 482 519 .. 1 42 [] 60.8 9.6e-18 PF07525.6.ls 1/1 482 519 .. 1 42 [] 62.7 1.1e-15 Alignments of top-scoring domains: PF00017.14.fs: domain 1 of 1, from 383 to 433: score 25.2, E = 3.5e-08 *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq y+G + R eAE lL +++GtFL+R+S + +++S+r+ + KIAA0671 383 -YWGVMDRYEAEALLEG--KPEGTFLLRDSAQEDYLFSVSFRRYN-- 424 gdrVkHyrIqs<-* r H rI + KIAA0671 425 --RSLHARIEQ 433 PF00017.14.ls: domain 1 of 1, from 383 to 460: score 17.3, E = 0.00014 *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq y+G + R eAE lL +++GtFL+R+S + +++S+r+ + KIAA0671 383 -YWGVMDRYEAEALLEG--KPEGTFLLRDSAQEDYLFSVSFRRYN-- 424 gdrVkHyrIqsldnggyyitggvk..F..ssLpeLvehY<-* r H rI + + + + F++s++ L ehY KIAA0671 425 --RSLHARIEQWNHN-FSFDAHDPcvFhsSTVTGLLEHY 460 PF07525.6.fs: domain 1 of 1, from 482 to 519: score 60.8, E = 9.6e-18 *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-* p SLq+ CR +I+r++++d+ i+ LPLP++L+d+L+ey+ KIAA0671 482 PFSLQYICRAVICRCTTYDG----IDGLPLPSMLQDFLKEYH 519 PF07525.6.ls: domain 1 of 1, from 482 to 519: score 62.7, E = 1.1e-15 *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-* p SLq+ CR +I+r++++d+ i+ LPLP++L+d+L+ey+ KIAA0671 482 PFSLQYICRAVICRCTTYDG----IDGLPLPSMLQDFLKEYH 519 //