# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk02359s1.fasta.huge -Q ../query/KIAA0670.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0670, 1286 aa vs ./tmplib.23663 library 1986219 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 16.7998+/-0.0124; mu= -41.5973+/- 0.840 mean_var=646.1147+/-152.420, 0's: 0 Z-trim: 9 B-trim: 5 in 1/39 Lambda= 0.050457 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0845 ( 1034 res) hk05234s1 (1034) 333 40.0 0.0025 >>KIAA0845 ( 1034 res) hk05234s1 (1034 aa) initn: 227 init1: 103 opt: 333 Z-score: 151.5 bits: 40.0 E(): 0.0025 Smith-Waterman score: 396; 21.590% identity (53.144% similar) in 843 aa overlap (83-890:240-1023) 60 70 80 90 100 KIAA06 LENLQKHSTPHAAFQPNSQIGEEMSQNSFIKHYLEKQQELLRQ---------RLEREARE .:. :. ::: : ... :.:. KIAA08 LARFAQEAEAARVDLQKKAQALQEECGYLRRHHQEEVGELLGQIQGSGAAQAQMQAETRD 210 220 230 240 250 260 110 120 130 140 150 160 KIAA06 AAELEEASAESE-DEMIHPEGVASLLPPD--FQSSLERPELELSRHSPRKSSSISEEKGD : . . .:: : ... ..: : : . :. :.: ::. . ..... . . KIAA08 ALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDR----LSEAAKVNTDAMRSAQEE 270 280 290 300 310 320 170 180 190 200 210 KIAA06 SDDEKPRKGERRSSRVRQARAAKLSEGSQPAEEEEDQETPSRNLR-----VRAD-RNLKT . . :. . :..... ...: : : .: :. ... . . . :. :: : KIAA08 ITEYR-RQLQARTTELEALKSTKDSLERQRSELEDRHQADIASYQEAIQQLDAELRNTKW 330 340 350 360 370 380 220 230 240 250 260 KIAA06 EEEEEEEEEEEEDDEEEEGDDEGQKSREAPILKEFKEEGEEIPRVKPEEM-----MDERP : . .: .. . . : : :. .: . :: :: . .. . KIAA08 EMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPIPFSLPEGLPKIPSVSTHI 390 400 410 420 430 440 270 280 290 300 310 320 KIAA06 KTRSQEQ-EVLERGGRFT----RSQEEARKSHLARQQQEKEMKTTSPLEEEEREIKSSQG :..:.:. .:.:.. . : .. ::.. .. . ...::: : ::: : . ..: KIAA08 KVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEG 450 460 470 480 490 500 330 340 350 360 370 380 KIAA06 LKEKSKSPSPPRLTEDRKKASLVALPEQTASEEETPPPLLTKEASSPPPHPQLHSEEEIE .:..::: . . .:.: .. .::. : ::.:: . : KIAA08 GEEETKSPPAEEAASPEKEA-------KSPVKEEAKSP---AEAKSPEKEEAKSPAEVKS 510 520 530 540 550 390 400 410 420 430 440 KIAA06 PMEGPAPPVLIQLSPPNTDADTRELLVSQHTVQLVGGLSP--LSSPSDTKAESPAE-KVP : .. .: :::.. . .: : :. :: .::. .:.:::: : : KIAA08 PEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVK-----SPEKAKSPAKEEAKSPAEAKSP 560 570 580 590 600 450 460 470 480 490 500 KIAA06 EESVLPLVQKSTLADYSAQKDLEPESDRSAQPLPLKIEELALAKGITEECLKQPSLEQKE :.. :. ... : . : .... .: .: : : :. :.: :.: . : KIAA08 EKAKSPVKEEAK----SPAEAKSPVKEEAKSPAEVKSPEKA--KSPTKEEAKSPE-KAKS 610 620 630 640 650 660 510 520 530 540 550 KIAA06 GRRASHTLLPSHRLKQSADSSSSRSSSSSSSSSRSRS--RSPDSSGSRSHSPLRSKQRDV ..:. : .. .: ....: .. ..: ...: .. .: ...::.. . .. KIAA08 PEKAKS---PEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSP 670 680 690 700 710 560 570 580 590 600 610 KIAA06 AQARTHANPRGRPKMGSRSTSESRSRSRSRSRSASSNSRKSLSPGVSRDSSTSYTETKDP .:.. .. ... ..: . .... ...: .. :: . : ... . ..:.: KIAA08 EKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTL-DVKSP 720 730 740 750 760 770 620 630 640 650 660 670 KIAA06 SSGQEVATPPVPQLQVCEPKERTSTSSSSVQARRLSQPESAEKHVTQRLQ-PERGSPKKC :. :: . .. : .. ...: .....::.:.. . . . ::. ::: KIAA08 ----EAKTP--AKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKK- 780 790 800 810 820 830 680 690 700 710 720 730 KIAA06 EAEEAEPPAATQPQTSETQTSHLPESERIHHTVEEKEEVTMDTSENRPENDVPEPPMPIA ::.. :. . . .:..... :.. . ::: .: : :.. .. : : : KIAA08 --EEVKSPVKEEEKPQEVKVKEPPKKAE-----EEKAPATPKTEEKK-DSKKEEAPKKEA 840 850 860 870 880 740 750 760 770 780 790 KIAA06 DQVSNDDRPEGSVED-EEKKESSLPKSFKRKISVVSATKGVPAGNSDTEGGQPGRKRRWG . . ... : .:: .:.: . . . : .: . : .:: : ..: .: KIAA08 PKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEK---- 890 900 910 920 930 800 810 820 830 840 850 KIAA06 ASTATTQKKPSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHD : ...:.:. . . : : : : :. : : . . .. :.. . .. : KIAA08 --TEVAKKEPDDAKAKEPSK---PAEKKEAAPEKK-DTKEEKAKKPEEKPKTEAKAKEDD 940 950 960 970 980 990 860 870 880 890 900 910 KIAA06 KGLKICRTVTQVVPAEGQENGQREEEEEEKEPEAEPPVPPQVSVEVALPPPAEHEVKKVT : :. . . :: :... .... : :: KIAA08 KTLSKEPSKPK---AEKAEKSSSTDQKDSKPPEKATEDKAAKGK 1000 1010 1020 1030 920 930 940 950 960 970 KIAA06 LGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELL 1286 residues in 1 query sequences 1986219 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:11:27 2008 done: Thu Dec 18 15:11:28 2008 Total Scan time: 0.800 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]