hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09381886/chunk_1/iprscan-20080502-09381886.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0667 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08623.1.ls TATA-binding protein interacting (TIP20) 337.9 1.6e-98 1 PF08623.1.fs TATA-binding protein interacting (TIP20) 336.1 5.6e-98 1 PF02985.12.fs HEAT repeat 105.7 1.3e-28 11 PF02985.12.ls HEAT repeat 92.6 1.1e-24 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 2/11 73 105 .. 1 36 [] 11.7 1.5 PF02985.12.ls 3/11 152 188 .. 1 36 [] 13.8 0.58 PF02985.12.ls 6/11 415 451 .. 1 36 [] 13.6 0.66 PF02985.12.ls 9/11 755 791 .. 1 36 [] 19.1 0.015 PF08623.1.fs 1/1 919 1085 .. 1 196 [] 336.1 5.6e-98 PF08623.1.ls 1/1 919 1085 .. 1 196 [] 337.9 1.6e-98 Alignments of top-scoring domains: PF02985.12.ls: domain 2 of 11, from 73 to 105: score 11.7, E = 1.5 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++l +ll l++p VR+ A+ aLg la + KIAA0667 73 AsLL----HCLLPQLSSPRLAVRKRAVGALGHLATAC 105 PF02985.12.ls: domain 3 of 11, from 152 to 188: score 13.8, E = 0.58 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +ld+l+pl+ + +n +d+e Re++++a+ a+++++ KIAA0667 152 GaHLDRLVPLVEDFCNLDDDELRESCLQAFEAFLRKC 188 PF02985.12.ls: domain 6 of 11, from 415 to 451: score 13.6, E = 0.66 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++l+ llp+++ ++ D+ +++ + A+ L +l++ l KIAA0667 415 HpHLPILLPPVMACVADSFYKIAAEALVVLQELVRAL 451 PF02985.12.ls: domain 9 of 11, from 755 to 791: score 19.1, E = 0.015 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + + el +ll++l++p+++VR+aA +aLg++ KIAA0667 755 PgPQRELKAVLLEALGSPSEDVRAAASYALGRVGAGS 791 PF08623.1.fs: domain 1 of 1, from 919 to 1085: score 336.1, E = 5.6e-98 *->slIlplLneLLPlLyseTvVkkELIReVqMGPFKHvvDDGLelRKaA sl+++lL+++LPlLy+eT+++++LIReV+MGPFKH+vDDGL++RKaA KIAA0667 919 SLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAA 965 YEtlYtLLdtcdAvlktHlskidlpsfldrivlaGLsDsehDIKlLcllm +E++Y+LL++c l ++d+++fl++ v++GL+D ++DI++L+++m KIAA0667 966 FECMYSLLESC-------LGQLDICEFLNH-VEDGLKD-HYDIRMLTFIM 1006 lskLvildpssvlvlnerLDVedtkpAvnsLaepLrktLskKlKdkavKQ +++L++l+p++vl +r+D +L+epLr+t+++K+K+ +vKQ KIAA0667 1007 VARLATLCPAPVL---QRVD---------RLIEPLRATCTAKVKAGSVKQ 1044 ElEkqqElqRSalRvvasLsrkLdaaesqiplagknpkwtefvsdikkn< E+Ekq+El+RSa+R+va+L + ip++gk+p + +f s+i+ n KIAA0667 1045 EFEKQDELKRSAMRAVAALLT--------IPEVGKSPIMADFSSQIRSN 1085 -* KIAA0667 - - PF08623.1.ls: domain 1 of 1, from 919 to 1085: score 337.9, E = 1.6e-98 *->slIlplLneLLPlLyseTvVkkELIReVqMGPFKHvvDDGLelRKaA sl+++lL+++LPlLy+eT+++++LIReV+MGPFKH+vDDGL++RKaA KIAA0667 919 SLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAA 965 YEtlYtLLdtcdAvlktHlskidlpsfldrivlaGLsDsehDIKlLcllm +E++Y+LL++c l ++d+++fl++ v++GL+D ++DI++L+++m KIAA0667 966 FECMYSLLESC-------LGQLDICEFLNH-VEDGLKD-HYDIRMLTFIM 1006 lskLvildpssvlvlnerLDVedtkpAvnsLaepLrktLskKlKdkavKQ +++L++l+p++vl +r+D +L+epLr+t+++K+K+ +vKQ KIAA0667 1007 VARLATLCPAPVL---QRVD---------RLIEPLRATCTAKVKAGSVKQ 1044 ElEkqqElqRSalRvvasLsrkLdaaesqiplagknpkwtefvsdikkn< E+Ekq+El+RSa+R+va+L + ip++gk+p + +f s+i+ n KIAA0667 1045 EFEKQDELKRSAMRAVAALLT--------IPEVGKSPIMADFSSQIRSN 1085 -* KIAA0667 - - //