hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09381886/chunk_1/iprscan-20080502-09381886.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0667
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08623.1.ls TATA-binding protein interacting (TIP20)       337.9    1.6e-98   1
PF08623.1.fs TATA-binding protein interacting (TIP20)       336.1    5.6e-98   1
PF02985.12.fs HEAT repeat                                    105.7    1.3e-28  11
PF02985.12.ls HEAT repeat                                     92.6    1.1e-24  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   2/11     73   105 ..     1    36 []    11.7      1.5
PF02985.12.ls   3/11    152   188 ..     1    36 []    13.8     0.58
PF02985.12.ls   6/11    415   451 ..     1    36 []    13.6     0.66
PF02985.12.ls   9/11    755   791 ..     1    36 []    19.1    0.015
PF08623.1.fs   1/1     919  1085 ..     1   196 []   336.1  5.6e-98
PF08623.1.ls   1/1     919  1085 ..     1   196 []   337.9  1.6e-98

Alignments of top-scoring domains:
PF02985.12.ls: domain 2 of 11, from 73 to 105: score 11.7, E = 1.5
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++l     +ll  l++p   VR+ A+ aLg la  +   
    KIAA0667    73    AsLL----HCLLPQLSSPRLAVRKRAVGALGHLATAC    105  

PF02985.12.ls: domain 3 of 11, from 152 to 188: score 13.8, E = 0.58
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        +ld+l+pl+ + +n +d+e Re++++a+ a+++++   
    KIAA0667   152    GaHLDRLVPLVEDFCNLDDDELRESCLQAFEAFLRKC    188  

PF02985.12.ls: domain 6 of 11, from 415 to 451: score 13.6, E = 0.66
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       ++l+ llp+++ ++ D+ +++ + A+  L +l++ l   
    KIAA0667   415    HpHLPILLPPVMACVADSFYKIAAEALVVLQELVRAL    451  

PF02985.12.ls: domain 9 of 11, from 755 to 791: score 19.1, E = 0.015
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       + + el  +ll++l++p+++VR+aA +aLg++       
    KIAA0667   755    PgPQRELKAVLLEALGSPSEDVRAAASYALGRVGAGS    791  

PF08623.1.fs: domain 1 of 1, from 919 to 1085: score 336.1, E = 5.6e-98
                   *->slIlplLneLLPlLyseTvVkkELIReVqMGPFKHvvDDGLelRKaA
                      sl+++lL+++LPlLy+eT+++++LIReV+MGPFKH+vDDGL++RKaA
    KIAA0667   919    SLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAA 965  

                   YEtlYtLLdtcdAvlktHlskidlpsfldrivlaGLsDsehDIKlLcllm
                   +E++Y+LL++c       l ++d+++fl++ v++GL+D ++DI++L+++m
    KIAA0667   966 FECMYSLLESC-------LGQLDICEFLNH-VEDGLKD-HYDIRMLTFIM 1006 

                   lskLvildpssvlvlnerLDVedtkpAvnsLaepLrktLskKlKdkavKQ
                   +++L++l+p++vl   +r+D         +L+epLr+t+++K+K+ +vKQ
    KIAA0667  1007 VARLATLCPAPVL---QRVD---------RLIEPLRATCTAKVKAGSVKQ 1044 

                   ElEkqqElqRSalRvvasLsrkLdaaesqiplagknpkwtefvsdikkn<
                   E+Ekq+El+RSa+R+va+L +        ip++gk+p + +f s+i+ n 
    KIAA0667  1045 EFEKQDELKRSAMRAVAALLT--------IPEVGKSPIMADFSSQIRSN  1085 

                   -*
                     
    KIAA0667     -    -    

PF08623.1.ls: domain 1 of 1, from 919 to 1085: score 337.9, E = 1.6e-98
                   *->slIlplLneLLPlLyseTvVkkELIReVqMGPFKHvvDDGLelRKaA
                      sl+++lL+++LPlLy+eT+++++LIReV+MGPFKH+vDDGL++RKaA
    KIAA0667   919    SLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAA 965  

                   YEtlYtLLdtcdAvlktHlskidlpsfldrivlaGLsDsehDIKlLcllm
                   +E++Y+LL++c       l ++d+++fl++ v++GL+D ++DI++L+++m
    KIAA0667   966 FECMYSLLESC-------LGQLDICEFLNH-VEDGLKD-HYDIRMLTFIM 1006 

                   lskLvildpssvlvlnerLDVedtkpAvnsLaepLrktLskKlKdkavKQ
                   +++L++l+p++vl   +r+D         +L+epLr+t+++K+K+ +vKQ
    KIAA0667  1007 VARLATLCPAPVL---QRVD---------RLIEPLRATCTAKVKAGSVKQ 1044 

                   ElEkqqElqRSalRvvasLsrkLdaaesqiplagknpkwtefvsdikkn<
                   E+Ekq+El+RSa+R+va+L +        ip++gk+p + +f s+i+ n 
    KIAA0667  1045 EFEKQDELKRSAMRAVAALLT--------IPEVGKSPIMADFSSQIRSN  1085 

                   -*
                     
    KIAA0667     -    -    

//