hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09363709/chunk_1/iprscan-20080502-09363709.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0666 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02181.13.ls Formin Homology 2 Domain 524.8 8.7e-155 1 PF02181.13.fs Formin Homology 2 Domain 522.8 3.4e-154 1 PF06371.4.fs Diaphanous GTPase-binding Domain 300.8 5.2e-98 1 PF06371.4.ls Diaphanous GTPase-binding Domain 302.3 8.1e-88 1 PF06367.7.fs Diaphanous FH3 Domain 246.5 4e-74 1 PF06367.7.ls Diaphanous FH3 Domain 248.4 1.4e-71 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06371.4.ls 1/1 52 240 .. 1 323 [] 302.3 8.1e-88 PF06371.4.fs 1/1 52 240 .. 1 323 [] 300.8 5.2e-98 PF06367.7.fs 1/1 242 448 .. 1 234 [] 246.5 4e-74 PF06367.7.ls 1/1 242 448 .. 1 234 [] 248.4 1.4e-71 PF02181.13.fs 1/1 608 991 .. 1 413 [] 522.8 3.4e-154 PF02181.13.ls 1/1 608 991 .. 1 413 [] 524.8 8.7e-155 Alignments of top-scoring domains: PF06371.4.ls: domain 1 of 1, from 52 to 240: score 302.3, E = 8.1e-88 *->lqmpsdeeLVdelFeelLkedrifmnlpedKrWeaLralsnekKWel l+mp++eeL d++F+el+ ++ ++l++++r ea++al++ekKW++ KIAA0666 52 LPMPPVEEL-DVMFSELV-DE---LDLTDKHR-EAMFALPAEKKWQI 92 icqylsknkkgkkkksskselnekaiaSdileilteesspqeYiekLrsg +c+++++++++k+++s +p++Yi++L+s+ KIAA0666 93 YCSKKKDQEENKGATS----------------------WPEFYIDQLNSM 120 assekllscekeeeehslknkslgslSpstkvvddgLkvaelesLrVsLr a++++ll++ekeeee+++k+ +esL+++Lr KIAA0666 121 AARKSLLALEKEEEEERSKT---------------------IESLKTALR 149 tnpvsWVkaFiklgNkGlirllkiLqtflkkkiyelestdsvesgveksk t+p+++V++Fi+l+ Gl+++l++L+t++++++++ KIAA0666 150 TKPMRFVTRFIDLD--GLSCILNFLKTMDYETSES--------------- 182 kdspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaqqlqkqql KIAA0666 - -------------------------------------------------- - qqsttliektlpsidkkiqfecirClKalMNnklGlkrvLsheesivikl +i++++i+C+KalMNn++G+++vL+h+es i++ KIAA0666 183 ----------------RIHTSLIGCIKALMNNSQGRAHVLAHSES--INV 214 lvlsLdssklktrklvleLLaalCiv<-* +++sL+++++kt+++vle+L+a+C+v KIAA0666 215 IAQSLSTENIKTKVAVLEILGAVCLV 240 PF06371.4.fs: domain 1 of 1, from 52 to 240: score 300.8, E = 5.2e-98 *->lqmpsdeeLVdelFeelLkedrifmnlpedKrWeaLralsnekKWel l+mp++eeL d++F+el+ ++ ++l++++r ea++al++ekKW++ KIAA0666 52 LPMPPVEEL-DVMFSELV-DE---LDLTDKHR-EAMFALPAEKKWQI 92 icqylsknkkgkkkksskselnekaiaSdileilteesspqeYiekLrsg +c+++++++++k+++s +p++Yi++L+s+ KIAA0666 93 YCSKKKDQEENKGATS----------------------WPEFYIDQLNSM 120 assekllscekeeeehslknkslgslSpstkvvddgLkvaelesLrVsLr a++++ll++ekeeee+++k+ +esL+++Lr KIAA0666 121 AARKSLLALEKEEEEERSKT---------------------IESLKTALR 149 tnpvsWVkaFiklgNkGlirllkiLqtflkkkiyelestdsvesgveksk t+p+++V++Fi+l+ Gl+++l++L+t++++++++ KIAA0666 150 TKPMRFVTRFIDLD--GLSCILNFLKTMDYETSES--------------- 182 kdspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaqqlqkqql KIAA0666 - -------------------------------------------------- - qqsttliektlpsidkkiqfecirClKalMNnklGlkrvLsheesivikl +i++++i+C+KalMNn++G+++vL+h+es i++ KIAA0666 183 ----------------RIHTSLIGCIKALMNNSQGRAHVLAHSES--INV 214 lvlsLdssklktrklvleLLaalCiv<-* +++sL+++++kt+++vle+L+a+C+v KIAA0666 215 IAQSLSTENIKTKVAVLEILGAVCLV 240 PF06367.7.fs: domain 1 of 1, from 242 to 448: score 246.5, E = 4e-74 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva gGh++vl+a+++ ++ +er+RF+tl+++ld s+g++++ + +k+a KIAA0666 242 GGHKKVLQAMLHYQKYASERTRFQTLINDLDK-STGRYRDEVSLKTA 287 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +m+FINa+ +g+++e+l+fRlhLR+Ef++lG++ +++kl+++ e+ +L KIAA0666 288 IMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREH--ENSTL 335 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv d ++++Fe+ r+ ed+ e++ r+e ++ + KIAA0666 336 DRHLDFFEML----RN------------EDELEFAKRFELVH-------I 362 eldslssvaellsnllkltgaedlllSilQhllllredseeskLvsyikl + +s+++++el + +l++++a++++ Sil+h+l ++++ ++++ v+y+ l KIAA0666 363 DTKSATQMFELTRKRLTHSEAYPHFMSILHHCLQMPYKRSGNT-VQYWLL 411 leeivqqIllhrtkppdpkfeqslqenldegterlld<-* l++i+qqI+ + k+ dp+++ +++n+++ + +l+ KIAA0666 412 LDRIIQQIVIQNDKGQDPDSTPLENFNIKNVVRMLVN 448 PF06367.7.ls: domain 1 of 1, from 242 to 448: score 248.4, E = 1.4e-71 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva gGh++vl+a+++ ++ +er+RF+tl+++ld s+g++++ + +k+a KIAA0666 242 GGHKKVLQAMLHYQKYASERTRFQTLINDLDK-STGRYRDEVSLKTA 287 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +m+FINa+ +g+++e+l+fRlhLR+Ef++lG++ +++kl+++ e+ +L KIAA0666 288 IMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREH--ENSTL 335 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv d ++++Fe+ r+ ed+ e++ r+e ++ + KIAA0666 336 DRHLDFFEML----RN------------EDELEFAKRFELVH-------I 362 eldslssvaellsnllkltgaedlllSilQhllllredseeskLvsyikl + +s+++++el + +l++++a++++ Sil+h+l ++++ ++++ v+y+ l KIAA0666 363 DTKSATQMFELTRKRLTHSEAYPHFMSILHHCLQMPYKRSGNT-VQYWLL 411 leeivqqIllhrtkppdpkfeqslqenldegterlld<-* l++i+qqI+ + k+ dp+++ +++n+++ + +l+ KIAA0666 412 LDRIIQQIVIQNDKGQDPDSTPLENFNIKNVVRMLVN 448 PF02181.13.fs: domain 1 of 1, from 608 to 991: score 522.8, E = 3.4e-154 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse k+ p+p++ LK+++W+Kl++++ gt vW+++d+++ +k ldl++ KIAA0666 608 KSIPQPTNALKSFNWSKLPENKLEGT-VWTEIDDTKVFK--ILDLED 651 lEelFsakakkkkekks.............seksskskkkkkeisvLDpk lE+ Fsa+ ++++ ++++++++ + ++++ +sk k+ke+sv+D++ KIAA0666 652 LERTFSAY---QRQQDFfvnsnskqkeadaIDDTLSSKLKVKELSVIDGR 698 rsQNiaIlLrklsklppeeivqailemDe.dvLgvvlflkemldllenLl r+QN++IlL++l kl+++ei++ail mDe++ L+ +d+le+Ll KIAA0666 699 RAQNCNILLSRL-KLSNDEIKRAILTMDEqEDLP--------KDMLEQLL 739 kmaPtkeElkklqekeykgdekspskLgraEqqFLlelskliprleeRlr k++P+k ++++l e+k++ ++++++a+ +FL+e+s+ i ++++Rl+ KIAA0666 740 KFVPEKSDIDLL--EEHKHE---LDRMAKAD-RFLFEMSR-INHYQQRLQ 782 allFkstFeeeveelkpsletleaAseeLreSrkfkklLeliLalGNyMN +l+Fk+ F+e+v+e+kp++e+++ +see+ +S +k+lLe++La+GNyMN KIAA0666 783 SLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMN 832 sGtrrrGnAkGFkLssLlKLsdvKstidnktTLLHflvkeieesEGkrlE +G+r GnA+GFk+ssL+K++d+Ks+id+++TLLH+l +++e+ KIAA0666 833 KGQR--GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVEN------- 873 eyrKLklpelldfsseLshVekAakvdleeLeadvkeLekglkklekele k+p +l++++eL ++++Aakv++ eL ++++ L+ glk++e+ele KIAA0666 874 -----KYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELE 918 lseeSkvsdeepsdkFvevmkeFleeAeekldkLesllkeakelfkelte ++++ ++++p+dkFv+v+++F+ A++++ +e+ll eak+lf ++++ KIAA0666 919 YQKS---QPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVK 965 YFghggedpkdetspeeFFkilrdFlnefk<-* +F ge + + +p+eFF+i+++Fl++++ KIAA0666 966 HF---GEEAG-KIQPDEFFGIFDQFLQAVS 991 PF02181.13.ls: domain 1 of 1, from 608 to 991: score 524.8, E = 8.7e-155 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse k+ p+p++ LK+++W+Kl++++ gt vW+++d+++ +k ldl++ KIAA0666 608 KSIPQPTNALKSFNWSKLPENKLEGT-VWTEIDDTKVFK--ILDLED 651 lEelFsakakkkkekks.............seksskskkkkkeisvLDpk lE+ Fsa+ ++++ ++++++++ + ++++ +sk k+ke+sv+D++ KIAA0666 652 LERTFSAY---QRQQDFfvnsnskqkeadaIDDTLSSKLKVKELSVIDGR 698 rsQNiaIlLrklsklppeeivqailemDe.dvLgvvlflkemldllenLl r+QN++IlL++l kl+++ei++ail mDe++ L+ +d+le+Ll KIAA0666 699 RAQNCNILLSRL-KLSNDEIKRAILTMDEqEDLP--------KDMLEQLL 739 kmaPtkeElkklqekeykgdekspskLgraEqqFLlelskliprleeRlr k++P+k ++++l e+k++ ++++++a+ +FL+e+s+ i ++++Rl+ KIAA0666 740 KFVPEKSDIDLL--EEHKHE---LDRMAKAD-RFLFEMSR-INHYQQRLQ 782 allFkstFeeeveelkpsletleaAseeLreSrkfkklLeliLalGNyMN +l+Fk+ F+e+v+e+kp++e+++ +see+ +S +k+lLe++La+GNyMN KIAA0666 783 SLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMN 832 sGtrrrGnAkGFkLssLlKLsdvKstidnktTLLHflvkeieesEGkrlE +G+r GnA+GFk+ssL+K++d+Ks+id+++TLLH+l +++e+ KIAA0666 833 KGQR--GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVEN------- 873 eyrKLklpelldfsseLshVekAakvdleeLeadvkeLekglkklekele k+p +l++++eL ++++Aakv++ eL ++++ L+ glk++e+ele KIAA0666 874 -----KYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELE 918 lseeSkvsdeepsdkFvevmkeFleeAeekldkLesllkeakelfkelte ++++ ++++p+dkFv+v+++F+ A++++ +e+ll eak+lf ++++ KIAA0666 919 YQKS---QPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVK 965 YFghggedpkdetspeeFFkilrdFlnefk<-* +F ge + + +p+eFF+i+++Fl++++ KIAA0666 966 HF---GEEAG-KIQPDEFFGIFDQFLQAVS 991 //