# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk02064.fasta.huge -Q ../query/KIAA0665.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA0665, 760 aa
vs ./tmplib.23663 library
1986745 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 14.1727+/-0.0112; mu= -24.5110+/- 0.753
mean_var=727.1098+/-174.637, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40
Lambda= 0.047564
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 38, opt: 26, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA1821 ( 609 res) fh12913 ( 609) 1095 90.2 6.5e-19
>>KIAA1821 ( 609 res) fh12913 (609 aa)
initn: 1305 init1: 619 opt: 1095 Z-score: 431.5 bits: 90.2 E(): 6.5e-19
Smith-Waterman score: 1270; 39.836% identity (67.377% similar) in 610 aa overlap (221-760:3-608)
200 210 220 230 240
KIAA06 LSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYG-AEQVKDLTKY
: :::.:.: .. .: .:.:. :.::
KIAA18 GRDPDGFLRVERVAALGLRFGQGEEVEKLVKY
10 20 30
250 260 270 280 290 300
KIAA06 LDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTYEANEV
:::. :: :.:.:: .:. :... . . : :... : : :. : : ...::
KIAA18 LDPNDLGRINFKDFCRGVFAMKGCE---ELLKDVLSVESAGTLPCAPEIPDCVE-QGSEV
40 50 60 70 80
310 320 330 340 350
KIAA06 TDSAYMGSESTYSECETFTD--EDTSTLVHPELQPEGDADSA--------GGSAVPSEC-
: .. .: : : . :.. ::. :: : .:: :. . :.:
KIAA18 TGPTFADGELIPREPGFFPEDEEEAMTLAPPEGPQELYTDSPMESTQSLEGSVGSPAEKD
90 100 110 120 130 140
360 370 380 390 400 410
KIAA06 --LDAMEEPDHGALLLLPGRPHPH--GQSVITVIGGEEHFEDYGEGSEAELSPETLCN--
: .. :. .:. :. .:. ..:..::.:::::::.... .: . :
KIAA18 GGLGGLFLPEDKSLVHTPSMTTSDLSTHSTTSLISNEEQFEDYGEGDDVDCAPSSPCPDD
150 160 170 180 190 200
420
KIAA06 -------GQLGCS--DPAFLTP--------------------------------------
..:: : . : ::
KIAA18 ETRTNVYSDLGSSVSSSAGQTPRKMRHVYNSELLDVYCSQCCKKINLLNDLEARLKNLKA
210 220 230 240 250 260
430 440 450 460 470 480
KIAA06 -SPTKRLSSKKVARYLHQSGALTME--ALEDPSPELMEGPEEDIADKVVFLERRVLELEK
::....:: .: : .:. .. . :: . ... ..::..:: :::..: :::.
KIAA18 NSPNRKISSTAFGRQLMHSSNFSSSNGSTEDLFRDSIDSCDNDITEKVSFLEKKVTELEN
270 280 290 300 310 320
490 500 510 520 530 540
KIAA06 DTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMEREKS
:. ..:. .:.:.::: :::::.. :::..:.:: : . . ::.::..: :.::::.
KIAA18 DSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAYGKLEREKA
330 340 350 360 370 380
550 560 570 580 590 600
KIAA06 IEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQENKR
:.: :..:.:::.:::.:::. . ::.. :.:.::.:.. :..:. .:::..:.. .
KIAA18 TEVELLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRLKDEMDLYK
390 400 410 420 430 440
610 620 630 640 650 660
KIAA06 RMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQR-RGRSSSMGLQEYHSR
:: :.: ..: .::...::::::::::::.:::::. ::. :. ::::.: :: :...:
KIAA18 RMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSASSGLGEFNAR
450 460 470 480 490 500
670 680 690 700 710 720
KIAA06 ARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAF-SESLAAEISSVS
::: :::.::.::::.: .:..::..:::::..::. ::.::.. ..::::::...:
KIAA18 AREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNLFAAQTKAQSLAAEIDTAS
510 520 530 540 550 560
730 740 750 760
KIAA06 RDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK
:::::::...::::::::..:.:.::.::.. ::::::.:
KIAA18 RDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH
570 580 590 600
760 residues in 1 query sequences
1986745 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:11:16 2008 done: Thu Dec 18 15:11:16 2008
Total Scan time: 0.580 Total Display time: 0.020
Function used was FASTA [version 34.26.5 April 26, 2007]