# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk02041.fasta.huge -Q ../query/KIAA0664.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0664, 1134 aa
 vs ./tmplib.23663 library

1986371 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0441+/-0.00567; mu= 18.6409+/- 0.386
 mean_var=110.9292+/-25.722, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.121773

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA2000  ( 699 res)   bf00135                     ( 699)  239 53.3 1.4e-07


>>KIAA2000  ( 699 res)   bf00135                          (699 aa)
 initn: 379 init1: 194 opt: 239  Z-score: 227.9  bits: 53.3 E(): 1.4e-07
Smith-Waterman score: 239;  23.827% identity (56.318% similar) in 277 aa overlap (768-1038:356-627)

       740       750       760       770       780       790       
KIAA06 ETVDQAVETYGLQKITLLREISLKTGIQVLLKEYSFDSRHKPAFTEEDVLNIFPVVKHVN
                                     ..: .. . : : .: ...  .  . .. :
KIAA20 VAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAYGADH-P-YTARELEALATLYQKQN
         330       340       350       360         370       380   

       800       810       820             830       840       850 
KIAA06 PKASDAFHFFQSGQAKVQQGFLKE-----GCELINE-ALNLFNNVYGAMHVETCACLRLL
        :  .: :: .. . :..:  .:.     :  :. . ::.: . . :    ..   :  :
KIAA20 -KYEQAEHF-RKKSFKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNEL
            390        400       410       420       430       440 

             860       870       880       890       900       910 
KIAA06 ARLHYIMGDYAEALSNQQKAVLMSERVMGTEHPNTIQEYMHLALYCFASSQLSTALSLLY
       . :.:....   : .  .... : :::.: .::.  :   .::  :  ..: . :  :  
KIAA20 GVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE
             450       460       470       480       490       500 

             920       930       940       950       960       970 
KIAA06 RARYLMLLVFGEDHPEMALLDNNIGLVLHGVMEYDLSLRFLENALAVSTKYHGPKALKVA
       ::  .   ... ::: .:   ...... . . . : .. . : :. .  :  :::  .::
KIAA20 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVA
             510       520       530       540       550       560 

             980       990      1000      1010      1020      1030 
KIAA06 LSHHLVARVYESKAEFRSALQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQR
        .   .: .: .  .   ::   ...  ::. .::. : .. :. . :  :. ..  ...
KIAA20 TALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEGGDFEK
             570       580       590       600       610       620 

            1040      1050      1060      1070      1080      1090 
KIAA06 TMNEIYRNGSSANIPPLKFTAPSMASVLEQLNVINGILFIPLSQKDLENLKAEVARRHQL
       .  :.:.                                                     
KIAA20 AA-ELYKRAMEIKEAETSLLGGKAPSRHSSSGDTFSLKTAHSPNVFLQQGQRKVQSNLLS
              630       640       650       660       670       680




1134 residues in 1 query   sequences
1986371 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:13 2008 done: Thu Dec 18 15:11:14 2008
 Total Scan time:  0.710 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]