hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09295572/chunk_1/iprscan-20080502-09295572.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0662 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02373.13.fs JmjC domain 73.4 3e-21 1 PF02373.13.ls JmjC domain 75.2 1.9e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02373.13.fs 1/1 249 349 .. 1 126 [] 73.4 3e-21 PF02373.13.ls 1/1 249 349 .. 1 126 [] 75.2 1.9e-19 Alignments of top-scoring domains: PF02373.13.fs: domain 1 of 1, from 249 to 349: score 73.4, E = 3e-21 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek ++ ++++ S+t++Hi++ g + ++y+ +++ k ++ ++++++ KIAA0662 249 YCLICVKDSYTDFHIDSGGAS-AWYHVLKGEK---TFYLIRPASAN- 290 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ + l++++ ++ ++++ +++++++++++ +++ KIAA0662 291 --ISLYERW-------RSASNHSEMFFADQVDKCY-----------KCIV 320 kpGEfVitfPgayHavfNlGfniaeavNF<-* k+G+++++++g+++a ++ +++a+a +F KIAA0662 321 KQGQTLFIPSGWIYATLTPVDCLAFAGHF 349 PF02373.13.ls: domain 1 of 1, from 249 to 349: score 75.2, E = 1.9e-19 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek ++ ++++ S+t++Hi++ g + ++y+ +++ k ++ ++++++ KIAA0662 249 YCLICVKDSYTDFHIDSGGAS-AWYHVLKGEK---TFYLIRPASAN- 290 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ + l++++ ++ ++++ +++++++++++ +++ KIAA0662 291 --ISLYERW-------RSASNHSEMFFADQVDKCY-----------KCIV 320 kpGEfVitfPgayHavfNlGfniaeavNF<-* k+G+++++++g+++a ++ +++a+a +F KIAA0662 321 KQGQTLFIPSGWIYATLTPVDCLAFAGHF 349 //