hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09281218/chunk_1/iprscan-20080502-09281218.nocrc
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Query sequence: KIAA0661
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           24.2    3.6e-08   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           26.0    0.00012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     977  1015 ..     1    50 []    24.2  3.6e-08
PF00097.15.ls   1/1     977  1015 ..     1    50 []    26.0  0.00012

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 977 to 1015: score 24.2, E = 3.6e-08
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ C    k+++     ++ C H      fC++C++  ++  ++++C
    KIAA0661   977    CPCCNTRKKDAV-----LTKCFHV-----FCFECVRGRYE-ARQRKC 1012 

                   plC<-*
                   p C   
    KIAA0661  1013 PKC    1015 

PF00097.15.ls: domain 1 of 1, from 977 to 1015: score 26.0, E = 0.00012
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ C    k+++     ++ C H      fC++C++  ++  ++++C
    KIAA0661   977    CPCCNTRKKDAV-----LTKCFHV-----FCFECVRGRYE-ARQRKC 1012 

                   plC<-*
                   p C   
    KIAA0661  1013 PKC    1015 

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