hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09231620/chunk_1/iprscan-20080502-09231620.nocrc
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Query sequence: KIAA0658
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF03441.4.ls   FAD binding domain of DNA photolyase     487.9   1.1e-143   1
PF03441.4.fs   FAD binding domain of DNA photolyase     486.0   4.2e-143   1
PF00875.8.ls   DNA photolyase                           266.7    4.3e-77   1
PF00875.8.fs   DNA photolyase                           264.8    1.6e-76   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00875.8.fs     1/1      18   185 ..     1   185 []   264.8  1.6e-76
PF00875.8.ls     1/1      18   185 ..     1   185 []   266.7  4.3e-77
PF03441.4.fs     1/1     226   503 ..     1   289 []   486.0 4.2e-143
PF03441.4.ls     1/1     226   503 ..     1   289 []   487.9 1.1e-143

Alignments of top-scoring domains:
PF00875.8.fs: domain 1 of 1, from 18 to 185: score 264.8, E = 1.6e-76
                   *->savVvWFRrDLRLhDNpALeyAaaaAaaaaap.vipVFildPeelga
                      + +V+WFR++LRLhDNpAL     +Aa+++a+ v++V+ildP+++ +
    KIAA0658    18    ASSVHWFRKGLRLHDNPAL-----LAAVRGARcVRCVYILDPWFAAS 59   

                   anpgpnrvrFLlqsLedLdqsLraLGsrLlvrrgdkrkdpaevllrlake
                   + +g+nr+rFLlqsLedLd+sLr+L+srL+v+rg+    pa+v++rl+ke
    KIAA0658    60 SSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQ----PADVFPRLFKE 105  

                   wgAshlffnhdyepyslrRDaavkkaLaeaGrvavetfnshtlyePgevl
                   wg+++l+f++d ep++++RDaa+ k ++eaG v+v+t+nshtly++++++
    KIAA0658   106 WGVTRLTFEYDSEPFGKERDAAIMKMAKEAG-VEVVTENSHTLYDLDRII 154  

                   dknGgpyPlvytpFlkiwskclpepvppleivpppkklp<-*
                   + nG+++Pl+y++F+ i s+   +++p      +p+ l+   
    KIAA0658   155 ELNGQKPPLTYKRFQAIISR---MELP-----KKPVGLV    185  

PF00875.8.ls: domain 1 of 1, from 18 to 185: score 266.7, E = 4.3e-77
                   *->savVvWFRrDLRLhDNpALeyAaaaAaaaaap.vipVFildPeelga
                      + +V+WFR++LRLhDNpAL     +Aa+++a+ v++V+ildP+++ +
    KIAA0658    18    ASSVHWFRKGLRLHDNPAL-----LAAVRGARcVRCVYILDPWFAAS 59   

                   anpgpnrvrFLlqsLedLdqsLraLGsrLlvrrgdkrkdpaevllrlake
                   + +g+nr+rFLlqsLedLd+sLr+L+srL+v+rg+    pa+v++rl+ke
    KIAA0658    60 SSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQ----PADVFPRLFKE 105  

                   wgAshlffnhdyepyslrRDaavkkaLaeaGrvavetfnshtlyePgevl
                   wg+++l+f++d ep++++RDaa+ k ++eaG v+v+t+nshtly++++++
    KIAA0658   106 WGVTRLTFEYDSEPFGKERDAAIMKMAKEAG-VEVVTENSHTLYDLDRII 154  

                   dknGgpyPlvytpFlkiwskclpepvppleivpppkklp<-*
                   + nG+++Pl+y++F+ i s+   +++p      +p+ l+   
    KIAA0658   155 ELNGQKPPLTYKRFQAIISR---MELP-----KKPVGLV    185  

PF03441.4.fs: domain 1 of 1, from 226 to 503: score 486.0, E = 4.2e-143
                   *->ppgetaAlkrLeeFlaeraWlaeYeknRndPnaaLkdgTSgLSPyLh
                       +get+Al+rL+++l+++aW+a+Ye++R+++n+ L+++++gLSPyL+
    KIAA0658   226    QGGETEALARLDKHLERKAWVANYERPRMNANS-LLASPTGLSPYLR 271  

                   FGqiSvRrvylevraaqklskkdgappgfeStdgvfleelawREfyrhfc
                   FG++S+R++y+++ +++k++k +++pp +      + ++l+wREf+++++
    KIAA0658   272 FGCLSCRLFYYRLWDLYKKVKRNSTPPLS------LFGQLLWREFFYTAA 315  

                   fnnPnydkekglrsilkqipWaenplafhAWrqGrTGYPlvDAaMRqLla
                   +nnP++d+++g++ i+ qipW+ np+a+++W +G+TG+P++DA+M qL++
    KIAA0658   316 TNNPRFDRMEGNP-ICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQ 364  

                   tGWmHnrlRmivaSFLtKdLLld.WrwGekyFmhgLlDaDwAkniGgWqw
                   +GW+H+++R++va+FLt+++L+ +W+ G ++F ++LlDaD+++n+G W+w
    KIAA0658   365 EGWIHHLARHAVACFLTRGDLWVsWESGVRVFDELLLDADFSVNAGSWMW 414  

                   ssssalDaqpyfRvfNPryqgdkfDPnGeYirrWlPELrgvpdkdllyIH
                   +s+sa+++q+ f++++P+ +g+++DP G+Yirr+lP L+ +p +   yI+
    KIAA0658   415 LSCSAFFQQF-FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSR---YIY 460  

                   ePWkerasvqraagvelgfgYPrPiVdhgcaRkrnvaaykray<-*
                   ePW++++s+q+aa++++g++YPrPiV+h++ ++ n++++k++y   
    KIAA0658   461 EPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIY    503  

PF03441.4.ls: domain 1 of 1, from 226 to 503: score 487.9, E = 1.1e-143
                   *->ppgetaAlkrLeeFlaeraWlaeYeknRndPnaaLkdgTSgLSPyLh
                       +get+Al+rL+++l+++aW+a+Ye++R+++n+ L+++++gLSPyL+
    KIAA0658   226    QGGETEALARLDKHLERKAWVANYERPRMNANS-LLASPTGLSPYLR 271  

                   FGqiSvRrvylevraaqklskkdgappgfeStdgvfleelawREfyrhfc
                   FG++S+R++y+++ +++k++k +++pp +      + ++l+wREf+++++
    KIAA0658   272 FGCLSCRLFYYRLWDLYKKVKRNSTPPLS------LFGQLLWREFFYTAA 315  

                   fnnPnydkekglrsilkqipWaenplafhAWrqGrTGYPlvDAaMRqLla
                   +nnP++d+++g++ i+ qipW+ np+a+++W +G+TG+P++DA+M qL++
    KIAA0658   316 TNNPRFDRMEGNP-ICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQ 364  

                   tGWmHnrlRmivaSFLtKdLLld.WrwGekyFmhgLlDaDwAkniGgWqw
                   +GW+H+++R++va+FLt+++L+ +W+ G ++F ++LlDaD+++n+G W+w
    KIAA0658   365 EGWIHHLARHAVACFLTRGDLWVsWESGVRVFDELLLDADFSVNAGSWMW 414  

                   ssssalDaqpyfRvfNPryqgdkfDPnGeYirrWlPELrgvpdkdllyIH
                   +s+sa+++q+ f++++P+ +g+++DP G+Yirr+lP L+ +p +   yI+
    KIAA0658   415 LSCSAFFQQF-FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSR---YIY 460  

                   ePWkerasvqraagvelgfgYPrPiVdhgcaRkrnvaaykray<-*
                   ePW++++s+q+aa++++g++YPrPiV+h++ ++ n++++k++y   
    KIAA0658   461 EPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIY    503  

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