hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09213286/chunk_1/iprscan-20080502-09213286.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0657 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 258.3 1e-74 10 PF00047.15.fs Immunoglobulin domain 211.8 1.4e-60 11 PF00047.15.ls Immunoglobulin domain 200.8 3e-57 9 PF07679.6.ls Immunoglobulin I-set domain 96.0 1.1e-25 5 PF07686.7.fs Immunoglobulin V-set domain 50.6 8.9e-14 9 PF07686.7.ls Immunoglobulin V-set domain 28.1 3e-05 5 PF00041.11.ls Fibronectin type III domain 14.7 0.0049 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.fs 1/10 30 62 .. 64 96 .] 22.0 8e-06 PF07686.7.ls 1/5 59 173 .. 1 141 [] 12.8 0.0025 PF07679.6.ls 1/5 87 172 .. 1 96 [] 56.1 1e-13 PF07679.6.fs 2/10 93 172 .. 12 96 .] 61.5 2.6e-17 PF00047.15.fs 2/11 96 157 .. 1 65 [] 15.2 0.0021 PF00047.15.ls 1/9 96 157 .. 1 65 [] 17.1 0.06 PF07679.6.fs 3/10 177 262 .. 1 96 [] 22.1 7.5e-06 PF07679.6.ls 2/5 177 262 .. 1 96 [] 24.0 1.1e-05 PF00047.15.fs 3/11 191 250 .. 1 65 [] 19.8 0.00011 PF00047.15.ls 2/9 191 250 .. 1 65 [] 21.7 0.0025 PF00041.11.ls 1/1 351 437 .. 1 84 [] 14.7 0.0049 PF07679.6.ls 3/5 551 637 .. 1 96 [] 2.1 0.00074 PF00047.15.fs 5/11 567 626 .. 1 65 [] 27.2 1e-06 PF00047.15.ls 3/9 567 626 .. 1 65 [] 29.1 1.4e-05 PF07679.6.fs 4/10 584 625 .. 33 80 .. 24.5 1.5e-06 PF00047.15.ls 4/9 658 717 .. 1 65 [] 32.3 1.6e-06 PF00047.15.fs 6/11 658 717 .. 1 65 [] 30.4 1.3e-07 PF07679.6.ls 4/5 736 819 .. 1 96 [] 1.4 0.00084 PF00047.15.ls 5/9 749 808 .. 1 65 [] 24.2 0.00043 PF00047.15.fs 7/11 749 808 .. 1 65 [] 22.3 2.3e-05 PF07679.6.fs 6/10 764 819 .. 31 96 .] 25.7 6.7e-07 PF00047.15.ls 6/9 840 899 .. 1 65 [] 22.2 0.0018 PF00047.15.fs 8/11 843 899 .. 4 65 .] 20.7 6.3e-05 PF07679.6.fs 7/10 856 910 .. 32 96 .] 21.4 1.2e-05 PF07679.6.ls 5/5 918 1006 .. 1 96 [] 12.3 0.0001 PF00047.15.ls 7/9 932 991 .. 1 65 [] 22.4 0.0015 PF00047.15.fs 9/11 932 991 .. 1 65 [] 20.5 7e-05 PF00047.15.ls 8/9 1028 1087 .. 1 65 [] 20.0 0.0077 PF00047.15.fs 10/11 1028 1087 .. 1 65 [] 18.2 0.00031 PF07679.6.fs 9/10 1044 1087 .. 32 81 .. 26.7 3.5e-07 PF00047.15.fs 11/11 1118 1151 .. 1 35 [. 27.0 1.2e-06 Alignments of top-scoring domains: PF07679.6.fs: domain 1 of 10, from 30 to 62: score 22.0, E = 8e-06 *->LtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* L+I+ + DsG+Y+C A+N G a+a a L+V KIAA0657 30 LRILAARLPDSGVYVCHARNAHGHAQAGALLQV 62 PF07686.7.ls: domain 1 of 5, from 59 to 173: score 12.8, E = 0.0025 *->qsqvtqepprWGLLLASLfWpt.......................sv +qv+q pp+ +++ ++++ + + ++ + +++ + KIAA0657 59 LLQVHQ-PPE-----------SppadpdeapapvveplkcapktfW- 92 tvaeGgsvtLpCtysGtfddsssssgtfsiyWyrq.qppgkgpeliiisy v+eG+ ++++C ++ + + + +i W ++p+ KIAA0657 93 -VNEGKHAKFRCYVM---GKP----EP-EIEWHWEgRPL----------- 122 ysyystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCa +++r++l ++g f L+ q+ D G Y Ca KIAA0657 123 ----------------LPDRRRLMYRDRDGGFVLKVLYCQAKDRGLYVCA 156 vsnsnelvfgggtrLtVl<-* ns ++ + ++L+V+ KIAA0657 157 ARNS-AGQTLSAVQLHVK 173 PF07679.6.ls: domain 1 of 5, from 87 to 172: score 56.1, E = 1e-13 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp pk V+eG+ a+f C V G PeP+++W+ G+pl + KIAA0657 87 -----APKTFWVNEGKHAKFRCYVMGKPEPEIEWHWEGRPLLP---- 124 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++r + d +g L+++ +q D G+Y+C A+NsaG+ + ++L+V KIAA0657 125 DRRRLMYRDR-DGGFVLKVLYCQAKDRGLYVCAARNSAGQTLSAVQLHV 172 -* KIAA0657 - - PF07679.6.fs: domain 2 of 10, from 93 to 172: score 61.5, E = 2.6e-17 *->VqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtydgG V+eG+ a+f C V G PeP+++W+ G+pl + ++r + d KIAA0657 93 VNEGKHAKFRCYVMGKPEPEIEWHWEGRPLLP----DRRRLMYRDR- 134 sgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* +g L+++ +q D G+Y+C A+NsaG+ + ++L+V KIAA0657 135 DGGFVLKVLYCQAKDRGLYVCAARNSAGQTLSAVQLHV 172 PF00047.15.fs: domain 2 of 11, from 96 to 157: score 15.2, E = 0.0021 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++++++C+v g p++++ W+ +g +l ++ + ++++++++ KIAA0657 96 GKHAKFRCYVM--GKPEPEIEWHWEGRpLLpDRRRLMYRDRDGGFV- 139 tsLtitnvtpeDggtYtCvv<-* L ++ + D g Y C + KIAA0657 140 --LKVLYCQAKDRGLYVCAA 157 PF00047.15.ls: domain 1 of 9, from 96 to 157: score 17.1, E = 0.06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++++++C+v g p++++ W+ +g +l ++ + ++++++++ KIAA0657 96 GKHAKFRCYVM--GKPEPEIEWHWEGRpLLpDRRRLMYRDRDGGFV- 139 tsLtitnvtpeDggtYtCvv<-* L ++ + D g Y C + KIAA0657 140 --LKVLYCQAKDRGLYVCAA 157 PF07679.6.fs: domain 3 of 10, from 177 to 262: score 22.1, E = 7.5e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp +Ft++++dve +e a++eCkV + Pt Wf+ +q l + KIAA0657 177 LRFTRPLQDVEGREHGIAVLECKVPNSRIPTA-WFREDQRLLP---- 218 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +++ ++g +L+I + + dD G+Y C + G++ + a++tV KIAA0657 219 CRKYEQIEEG--TVRRLIIHRLKADDDGIYLCEMR---GRVRTVANVTV 262 -* KIAA0657 - - PF07679.6.ls: domain 2 of 5, from 177 to 262: score 24.0, E = 1.1e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp +Ft++++dve +e a++eCkV + Pt Wf+ +q l + KIAA0657 177 LRFTRPLQDVEGREHGIAVLECKVPNSRIPTA-WFREDQRLLP---- 218 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +++ ++g +L+I + + dD G+Y C + G++ + a++tV KIAA0657 219 CRKYEQIEEG--TVRRLIIHRLKADDDGIYLCEMR---GRVRTVANVTV 262 -* KIAA0657 - - PF00047.15.fs: domain 3 of 11, from 191 to 250: score 19.8, E = 0.00011 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++ + L C v ++ + W+r++++l + ++ + e+++ + KIAA0657 191 HGIAVLECKV---PNSRIPTAWFREDQrLLpCRKYEQIEEGTVRR-- 232 tsLtitnvtpeDggtYtCvv<-* L i++++ +D+g+Y C+ KIAA0657 233 --LIIHRLKADDDGIYLCEM 250 PF00047.15.ls: domain 2 of 9, from 191 to 250: score 21.7, E = 0.0025 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++ + L C v ++ + W+r++++l + ++ + e+++ + KIAA0657 191 HGIAVLECKV---PNSRIPTAWFREDQrLLpCRKYEQIEEGTVRR-- 232 tsLtitnvtpeDggtYtCvv<-* L i++++ +D+g+Y C+ KIAA0657 233 --LIIHRLKADDDGIYLCEM 250 PF00041.11.ls: domain 1 of 1, from 351 to 437: score 14.7, E = 0.0049 *->PsaPtnltvtdv...tstsltlsWspPt.gngpitgYevtyRqpkng s+P+ + + ++ +++ l+W+pP++ + Y+++ q++++ KIAA0657 351 HSPPGPPILAEMfkgHKNTVLLTWKPPEpAPETPFIYRLER-QEVGS 396 gewkelt..vpgtttsytltgL.kPgt.eYtvrVqAvnggGGpeS<-* ++w + + + + +++ g +P ++Y +r+ +v+g+ ++S KIAA0657 397 EDWIQCFsiEKAGA--VEVPGDcVPSEgDYRFRICTVSGH--GRS 437 PF07679.6.ls: domain 3 of 5, from 551 to 637: score 2.1, E = 0.00074 *->PkFtqkp..kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl +++ + ++ +++ + e+++++C+ + + +W+KdGq++ + KIAA0657 551 VHILSPQdkVSLTFTTSERVVLTCELSRV-DFPATWYKDGQKVEE-- 594 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt s+ + v+ dg ++L+ ++++ DsG+ C+ ++a + +t KIAA0657 595 --SELLVVKMDG--RKHRLILPEAKVQDSGEFECR----TEGVSAFFGVT 636 V<-* V KIAA0657 637 V 637 PF00047.15.fs: domain 5 of 11, from 567 to 626: score 27.2, E = 1e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e+v LtC+ + +d tW+++g+++++++l + ++ ++ KIAA0657 567 SERVVLTCEL---SRVDFPATWYKDGQkVEeSELLVVKMDGRKHR-- 608 tsLtitnvtpeDggtYtCvv<-* L + +++ +D+g++ C+ KIAA0657 609 --LILPEAKVQDSGEFECRT 626 PF00047.15.ls: domain 3 of 9, from 567 to 626: score 29.1, E = 1.4e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e+v LtC+ + +d tW+++g+++++++l + ++ ++ KIAA0657 567 SERVVLTCEL---SRVDFPATWYKDGQkVEeSELLVVKMDGRKHR-- 608 tsLtitnvtpeDggtYtCvv<-* L + +++ +D+g++ C+ KIAA0657 609 --LILPEAKVQDSGEFECRT 626 PF07679.6.fs: domain 4 of 10, from 584 to 625: score 24.5, E = 1.5e-06 *->sWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtC +W+KdGq++ + s+ + v+ dg ++L+ ++++ DsG+ C KIAA0657 584 TWYKDGQKVEE----SELLVVKMDG--RKHRLILPEAKVQDSGEFEC 624 v<-* + KIAA0657 625 R 625 PF00047.15.ls: domain 4 of 9, from 658 to 717: score 32.3, E = 1.6e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e v+L C+v +d+ v+W+++g+++++++ v ++ + KIAA0657 658 SECVMLACEV---DREDAPVRWYKDGQeVEeSDFVVLENEGPHRR-- 699 tsLtitnvtpeDggtYtCvv<-* L++ +++p+Dgg++ Cv+ KIAA0657 700 --LVLPATQPSDGGEFQCVA 717 PF00047.15.fs: domain 6 of 11, from 658 to 717: score 30.4, E = 1.3e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e v+L C+v +d+ v+W+++g+++++++ v ++ + KIAA0657 658 SECVMLACEV---DREDAPVRWYKDGQeVEeSDFVVLENEGPHRR-- 699 tsLtitnvtpeDggtYtCvv<-* L++ +++p+Dgg++ Cv+ KIAA0657 700 --LVLPATQPSDGGEFQCVA 717 PF07679.6.ls: domain 4 of 5, from 736 to 819: score 1.4, E = 0.00084 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp + + k + + V+ e+++++C+ P +V W+KdG+++ + KIAA0657 736 VYPSGKVYVAAVRL-ERVVLTCELC-RPWAEVRWTKDGEEVVE---- 776 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< s+ + ++ +L+ + vq +DsG+Y C + +as+++tV KIAA0657 777 SPALLLQKED--TVRRLVLPAVQLEDSGEYLC----EIDDESASFTVTV 819 -* KIAA0657 - - PF00047.15.ls: domain 5 of 9, from 749 to 808: score 24.2, E = 0.00043 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e+v LtC+ p ++v+W+++g ++ ++ +++ + KIAA0657 749 LERVVLTCEL---CRPWAEVRWTKDGEeVVeSPALLLQKEDTVRR-- 790 tsLtitnvtpeDggtYtCvv<-* L++ +v+ eD+g+Y C+ KIAA0657 791 --LVLPAVQLEDSGEYLCEI 808 PF00047.15.fs: domain 7 of 11, from 749 to 808: score 22.3, E = 2.3e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e+v LtC+ p ++v+W+++g ++ ++ +++ + KIAA0657 749 LERVVLTCEL---CRPWAEVRWTKDGEeVVeSPALLLQKEDTVRR-- 790 tsLtitnvtpeDggtYtCvv<-* L++ +v+ eD+g+Y C+ KIAA0657 791 --LVLPAVQLEDSGEYLCEI 808 PF07679.6.fs: domain 6 of 10, from 764 to 819: score 25.7, E = 6.7e-07 *->tVsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkY +V W+KdG+++ + s+ + ++ +L+ + vq +DsG+Y KIAA0657 764 EVRWTKDGEEVVE----SPALLLQKED--TVRRLVLPAVQLEDSGEY 804 tCvAtNsaGeaeasaeLtV<-* C + +as+++tV KIAA0657 805 LC----EIDDESASFTVTV 819 PF00047.15.ls: domain 6 of 9, from 840 to 899: score 22.2, E = 0.0018 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e v L C+ + +d+ v+W+++g ++++++ +++ + KIAA0657 840 LECVVLMCEL---SREDAPVRWYKDGLeVEeSEALVLERDGPRCR-- 881 tsLtitnvtpeDggtYtCvv<-* L++ +++peDgg++ C + KIAA0657 882 --LVLPAAQPEDGGEFVCDA 899 PF00047.15.fs: domain 8 of 11, from 843 to 899: score 20.7, E = 6.3e-05 *->vtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyqtsL v L C+ + +d+ v+W+++g ++++++ +++ + L KIAA0657 843 VVLMCEL---SREDAPVRWYKDGLeVEeSEALVLERDGPRCR----L 882 titnvtpeDggtYtCvv<-* ++ +++peDgg++ C + KIAA0657 883 VLPAAQPEDGGEFVCDA 899 PF07679.6.fs: domain 7 of 10, from 856 to 910: score 21.4, E = 1.2e-05 *->VsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYt V W+KdG ++ + s+ + dg +++L+ + +qp+D G+ + KIAA0657 856 VRWYKDGLEVEE----SEALVLERDG--PRCRLVLPAAQPEDGGEFV 896 CvAtNsaGeaeasaeLtV<-* C aG ++a +++tV KIAA0657 897 C----DAGDDSAFFTVTV 910 PF07679.6.ls: domain 5 of 5, from 918 to 1006: score 12.3, E = 0.0001 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp ++ p+++ V+ Ge+++++C+ + P V W ++G+p+++ KIAA0657 918 LALETTPSPLCVAPGEPVVLSCELSRAGAP-VVWSHNGRPVQE---- 959 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++ + +++g + L I+ + p+ +G+YtC+ G + s++++V KIAA0657 960 GEGLELHAEG--PRRVLCIQAAGPAHAGLYTCQSGAAPGAPSLSFTVQV 1006 -* KIAA0657 - - PF00047.15.ls: domain 7 of 9, from 932 to 991: score 22.4, E = 0.0015 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v L+C+ + ++ v W +ng ++++g+ + ++ +++ KIAA0657 932 GEPVVLSCEL---SRAGAPVVWSHNGRpVQeGEGLELHAEGPRRV-- 973 tsLtitnvtpeDggtYtCvv<-* L i+++ p ++g YtC+ KIAA0657 974 --LCIQAAGPAHAGLYTCQS 991 PF00047.15.fs: domain 9 of 11, from 932 to 991: score 20.5, E = 7e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v L+C+ + ++ v W +ng ++++g+ + ++ +++ KIAA0657 932 GEPVVLSCEL---SRAGAPVVWSHNGRpVQeGEGLELHAEGPRRV-- 973 tsLtitnvtpeDggtYtCvv<-* L i+++ p ++g YtC+ KIAA0657 974 --LCIQAAGPAHAGLYTCQS 991 PF00047.15.ls: domain 8 of 9, from 1028 to 1087: score 20.0, E = 0.0077 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L+ + + p+ v+W+++g +l + +v + + +++ KIAA0657 1028 GGDLELVVHL---SGPGGPVRWYKDGErLAsQGRVQLEQAGARQV-- 1069 tsLtitnvtpeDggtYtCvv<-* L+++ ++++D+g+Y C + KIAA0657 1070 --LRVQGARSGDAGEYLCDA 1087 PF00047.15.fs: domain 10 of 11, from 1028 to 1087: score 18.2, E = 0.00031 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L+ + + p+ v+W+++g +l + +v + + +++ KIAA0657 1028 GGDLELVVHL---SGPGGPVRWYKDGErLAsQGRVQLEQAGARQV-- 1069 tsLtitnvtpeDggtYtCvv<-* L+++ ++++D+g+Y C + KIAA0657 1070 --LRVQGARSGDAGEYLCDA 1087 PF07679.6.fs: domain 9 of 10, from 1044 to 1087: score 26.7, E = 3.5e-07 *->VsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYt V W+KdG+ l s +r++ g ++ L+++++ ++D+G+Y KIAA0657 1044 VRWYKDGERLAS----QGRVQLEQAG--ARQVLRVQGARSGDAGEYL 1084 CvA<-* C A KIAA0657 1085 CDA 1087 PF00047.15.fs: domain 11 of 11, from 1118 to 1151: score 27.0, E = 1.2e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvts<-* G+++t++C+v +ppd++vtWlrng +t+g + s KIAA0657 1118 GDDATFRCEV---SPPDADVTWLRNGAvVTpGPQRQS 1151 //