hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09144131/chunk_1/iprscan-20080502-09144131.nocrc
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Query sequence: KIAA0654
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00454                                                 114.1    1.5e-29   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00454    1/3     908   977 ..     1    67 []    50.4  2.4e-10
SM00454    2/3    1023  1090 ..     1    67 []    31.3  0.00013
SM00454    3/3    1111  1183 ..     1    67 []    32.5  5.7e-05

Alignments of top-scoring domains:
SM00454: domain 1 of 3, from 908 to 977: score 50.4, E = 2.4e-10
                   *->vs.wspesVaeWLesigleq..YadnFrkngidgeelllltseedLk
                      +  w+ ++V  WLe        Y+ + r+n  +g+++++l++ e   
    KIAA0654   908    FAaWDGPTVVSWLELWVGMPawYVAACRANVKSGAIMANLSDTEIQR 954  

                   elGitllGhRkkIlsaiqklkeq<-*
                   e+Gi+++ hR+k+  aiq++ +    
    KIAA0654   955 EIGISNPLHRLKLRLAIQEMVSL    977  

SM00454: domain 2 of 3, from 1023 to 1090: score 31.3, E = 0.00013
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       + +++    +WL s+gl+qY++ F++  +d ++l +l+  e+  +l
    KIAA0654  1023    GDmNHEWVGNDWLPSLGLPQYRSYFMESLVDARMLDHLNKKELRGQL 1069 

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ +  hR  + ++i +lk     
    KIAA0654  1070 KMVDSFHRVSLHYGIMCLKRL    1090 

SM00454: domain 3 of 3, from 1111 to 1183: score 32.5, E = 5.7e-05
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v  ws+e V  W  ++gl + a n+++ g++g++l+l ++ + ++++
    KIAA0654  1111    VMvWSNERVMGWVSGLGLKEFATNLTESGVHGALLALDEtfdysDLA 1157 

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                   +L+++  +++++R+ + ++++ l +    
    KIAA0654  1158 LLLQIPTQNAQARQLLEKEFSNLISL    1183 

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