hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09144131/chunk_1/iprscan-20080502-09144131.nocrc
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Query sequence: KIAA0654
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)                66.0    8.4e-19   2
PF07647.7.fs SAM domain (Sterile alpha motif)                64.7    2.6e-18   3
PF00536.20.ls SAM domain (Sterile alpha motif)                69.9    7.3e-18   2
PF07647.7.ls SAM domain (Sterile alpha motif)                59.3    1.2e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.ls   1/3     908   977 ..     1    72 []    13.7    0.048
PF00536.20.ls   1/2     909   975 ..     1    65 []    22.9    0.001
PF00536.20.fs   1/2     909   975 ..     1    65 []    20.9  1.6e-05
PF00536.20.fs   2/2    1024  1088 ..     1    65 []    45.0  1.2e-12
PF00536.20.ls   2/2    1024  1088 ..     1    65 []    47.0  5.8e-11
PF07647.7.ls   2/3    1027  1090 ..     1    72 []     8.4     0.17
PF07647.7.fs   3/3    1111  1183 ..     1    72 []    35.2  1.2e-09
PF07647.7.ls   3/3    1111  1183 ..     1    72 []    37.2  5.3e-08

Alignments of top-scoring domains:
PF07647.7.ls: domain 1 of 3, from 908 to 977: score 13.7, E = 0.048
                   *->veswslesvaeWLe.siglegqYkdnFsdqgitglellllrlteedL
                         w+ ++v +WLe  +g+ +    +  ++++ ++ ++ ++l+  + 
    KIAA0654   908    FAAWDGPTVVSWLElWVGM-PAWYVAACRANVKSGAIM-ANLSDTEI 952  

                   aklalGitsvghRkkilkkiqelkqq<-*
                    + ++Gi+++ hR+k+  +iqe+      
    KIAA0654   953 -QREIGISNPLHRLKLRLAIQEMVSL    977  

PF00536.20.ls: domain 1 of 2, from 909 to 975: score 22.9, E = 0.001
                   *->dgwsfesVgeWLesi.gl.gqYidnFlsagyidgdtllqlteeDLed
                        w+  +V  WLe   g+++ Y+ +  +a+ ++g  +++l++ ++++
    KIAA0654   909    AAWDGPTVVSWLELWvGMpAWYVAAC-RANVKSGAIMANLSDTEIQR 954  

                   .lGvtllGHrkKIlssIqgLk<-*
                   ++G+ ++ Hr+K+ ++Iq +    
    KIAA0654   955 eIGISNPLHRLKLRLAIQEMV    975  

PF00536.20.fs: domain 1 of 2, from 909 to 975: score 20.9, E = 1.6e-05
                   *->dgwsfesVgeWLesi.gl.gqYidnFlsagyidgdtllqlteeDLed
                        w+  +V  WLe   g+++ Y+ +  +a+ ++g  +++l++ ++++
    KIAA0654   909    AAWDGPTVVSWLELWvGMpAWYVAAC-RANVKSGAIMANLSDTEIQR 954  

                   .lGvtllGHrkKIlssIqgLk<-*
                   ++G+ ++ Hr+K+ ++Iq +    
    KIAA0654   955 eIGISNPLHRLKLRLAIQEMV    975  

PF00536.20.fs: domain 2 of 2, from 1024 to 1088: score 45.0, E = 1.2e-12
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   +WL s+gl+qY++ F +  ++d ++l +l + +L+ +l
    KIAA0654  1024    DMNHEWVGNDWLPSLGLPQYRSYF-MESLVDARMLDHLNKKELRGqL 1069 

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr  + + I  Lk   
    KIAA0654  1070 KMVDSFHRVSLHYGIMCLK    1088 

PF00536.20.ls: domain 2 of 2, from 1024 to 1088: score 47.0, E = 5.8e-11
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   +WL s+gl+qY++ F +  ++d ++l +l + +L+ +l
    KIAA0654  1024    DMNHEWVGNDWLPSLGLPQYRSYF-MESLVDARMLDHLNKKELRGqL 1069 

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr  + + I  Lk   
    KIAA0654  1070 KMVDSFHRVSLHYGIMCLK    1088 

PF07647.7.ls: domain 2 of 3, from 1027 to 1090: score 8.4, E = 0.17
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                       e   +    +WL s+gl +qY+ +F++  ++  ++l  +l+  +L 
    KIAA0654  1027    HEWVGN----DWLPSLGL-PQYRSYFMESLVDA-RML-DHLNKKEL- 1065 

                   klalGitsvghRkkilkkiqelkqq<-*
                     +l++ +  hR  +  +i +lk     
    KIAA0654  1066 RGQLKMVDSFHRVSLHYGIMCLKRL    1090 

PF07647.7.fs: domain 3 of 3, from 1111 to 1183: score 35.2, E = 1.2e-09
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +ws+e+v+ W++++gl ++++ n+++ g++g+ l l++ ++ +dL
    KIAA0654  1111    VMVWSNERVMGWVSGLGL-KEFATNLTESGVHGALLALdETFDYSDL 1156 

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R+ + k++ +l+     
    KIAA0654  1157 AlLLQIPTQNAQARQLLEKEFSNLISL    1183 

PF07647.7.ls: domain 3 of 3, from 1111 to 1183: score 37.2, E = 5.3e-08
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +ws+e+v+ W++++gl ++++ n+++ g++g+ l l++ ++ +dL
    KIAA0654  1111    VMVWSNERVMGWVSGLGL-KEFATNLTESGVHGALLALdETFDYSDL 1156 

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R+ + k++ +l+     
    KIAA0654  1157 AlLLQIPTQNAQARQLLEKEFSNLISL    1183 

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