hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09130404/chunk_1/iprscan-20080502-09130404.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0653 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07686.7.fs Immunoglobulin V-set domain 20.9 2e-05 1 PF07686.7.ls Immunoglobulin V-set domain 22.7 0.00025 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.fs 1/1 57 173 .. 1 141 [] 20.9 2e-05 PF07686.7.ls 1/1 57 173 .. 1 141 [] 22.7 0.00025 Alignments of top-scoring domains: PF07686.7.fs: domain 1 of 1, from 57 to 173: score 20.9, E = 2e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ + +++ +v++ +G +v+L+C + ++s KIAA0653 57 SLRADT-QEK------------EVRAMVGSDVELSCACP---EGSRF 87 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + ++ ++yW q++ ++ + + +++ +v +r+++r +s KIAA0653 88 DLNDVYVYW---QTSESKTVVTY-----HIPQNSSLENVDSRYRNRALMS 129 gnps.kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* + + +gdfsL++ n+++ D+ +C v + l f++ + V+ KIAA0653 130 PAGMlRGDFSLRLFNVTPQDEQKFHCLVLSQ-SLGFQEVLSVEVT 173 PF07686.7.ls: domain 1 of 1, from 57 to 173: score 22.7, E = 0.00025 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ + +++ +v++ +G +v+L+C + ++s KIAA0653 57 SLRADT-QEK------------EVRAMVGSDVELSCACP---EGSRF 87 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + ++ ++yW q++ ++ + + +++ +v +r+++r +s KIAA0653 88 DLNDVYVYW---QTSESKTVVTY-----HIPQNSSLENVDSRYRNRALMS 129 gnps.kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* + + +gdfsL++ n+++ D+ +C v + l f++ + V+ KIAA0653 130 PAGMlRGDFSLRLFNVTPQDEQKFHCLVLSQ-SLGFQEVLSVEVT 173 //