hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09080347/chunk_1/iprscan-20080502-09080347.nocrc
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Query sequence: KIAA0650
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF06470.4.fs SMC proteins Flexible Hinge Domain            114.3    6.6e-34   1
PF06470.4.ls SMC proteins Flexible Hinge Domain            116.2    8.8e-32   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF06470.4.fs   1/1     561   690 ..     1   124 []   114.3  6.6e-34
PF06470.4.ls   1/1     561   690 ..     1   124 []   116.2  8.8e-32

Alignments of top-scoring domains:
PF06470.4.fs: domain 1 of 1, from 561 to 690: score 114.3, E = 6.6e-34
                   *->asgv.lGrvadlisVkekgyekAleaaLGadLdavvVdnaeaakkal
                       sg+ lG +a+l+++++++ ++ ++++L +d+d+vv+ +++aa++++
    KIAA0650   561    GSGDvLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIY 607  

                   eelkkarlGRaTflPLdkikpnpvatlealpegatplaglvrlpa.....
                   +e+++++    ++lPLd i +++     + +++ +p++++ +l++++ ++
    KIAA0650   608 DETQGRQ----QVLPLDSIYKKT----LPDWKRSLPHFRNGKLYFkpigd 649  

                   .....dlidyd...pelrkalrrlLgqtlvVedldeArrla<-*
                   +   +dl++++++ +++++++ +lLg+t++ ++ld+A++++   
    KIAA0650   650 pvfarDLLTFPdnvEHCETVFGMLLGDTIILDNLDAANHYR    690  

PF06470.4.ls: domain 1 of 1, from 561 to 690: score 116.2, E = 8.8e-32
                   *->asgv.lGrvadlisVkekgyekAleaaLGadLdavvVdnaeaakkal
                       sg+ lG +a+l+++++++ ++ ++++L +d+d+vv+ +++aa++++
    KIAA0650   561    GSGDvLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIY 607  

                   eelkkarlGRaTflPLdkikpnpvatlealpegatplaglvrlpa.....
                   +e+++++    ++lPLd i +++     + +++ +p++++ +l++++ ++
    KIAA0650   608 DETQGRQ----QVLPLDSIYKKT----LPDWKRSLPHFRNGKLYFkpigd 649  

                   .....dlidyd...pelrkalrrlLgqtlvVedldeArrla<-*
                   +   +dl++++++ +++++++ +lLg+t++ ++ld+A++++   
    KIAA0650   650 pvfarDLLTFPdnvEHCETVFGMLLGDTIILDNLDAANHYR    690  

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