hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09025723/chunk_1/iprscan-20080502-09025723.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0647 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06602.5.ls Myotubularin-related 272.4 8.4e-79 1 PF06602.5.fs Myotubularin-related 270.4 3.4e-78 1 PF01363.12.ls FYVE zinc finger 80.1 6.4e-21 1 PF01363.12.fs FYVE zinc finger 78.3 6.5e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06602.5.fs 1/1 183 341 .. 1 123 [] 270.4 3.4e-78 PF06602.5.ls 1/1 183 341 .. 1 123 [] 272.4 8.4e-79 PF01363.12.fs 1/1 1109 1175 .. 1 77 [] 78.3 6.5e-21 PF01363.12.ls 1/1 1109 1175 .. 1 77 [] 80.1 6.4e-21 Alignments of top-scoring domains: PF06602.5.fs: domain 1 of 1, from 183 to 341: score 270.4, E = 3.4e-78 *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv Y+lCpsYP+kL+VP++i+D+eL++vA+FRs++R+PV+++rH +ngA+ KIAA0647 183 YKLCPSYPQKLLVPVWITDKELENVASFRSWKRIPVVVYRHLRNGAA 229 IvRcSQPLvGfsgkRckeDEkllkailkanaiD................. I+RcSQP+++++g+R+++DE+l+++i+ka+a+D++++ ++++ +++++++ KIAA0647 230 IARCSQPEISWWGWRNADDEYLVTSIAKACALDpgtratggslstgnndt 279 ..................e.kiqskklyIvDaRprtnAlaNrAkGGGyEn ++ + + +++ + ++ e++++++kl+I+DaR++t+A+aNrAkGGG+E+ KIAA0647 280 seacdadfdssltacsgvEsTAAPQKLLILDARSYTAAVANRAKGGGCEC 329 eenYpnaelvfl<-* ee+Ypn+e+vf+ KIAA0647 330 EEYYPNCEVVFM 341 PF06602.5.ls: domain 1 of 1, from 183 to 341: score 272.4, E = 8.4e-79 *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv Y+lCpsYP+kL+VP++i+D+eL++vA+FRs++R+PV+++rH +ngA+ KIAA0647 183 YKLCPSYPQKLLVPVWITDKELENVASFRSWKRIPVVVYRHLRNGAA 229 IvRcSQPLvGfsgkRckeDEkllkailkanaiD................. I+RcSQP+++++g+R+++DE+l+++i+ka+a+D++++ ++++ +++++++ KIAA0647 230 IARCSQPEISWWGWRNADDEYLVTSIAKACALDpgtratggslstgnndt 279 ..................e.kiqskklyIvDaRprtnAlaNrAkGGGyEn ++ + + +++ + ++ e++++++kl+I+DaR++t+A+aNrAkGGG+E+ KIAA0647 280 seacdadfdssltacsgvEsTAAPQKLLILDARSYTAAVANRAKGGGCEC 329 eenYpnaelvfl<-* ee+Ypn+e+vf+ KIAA0647 330 EEYYPNCEVVFM 341 PF01363.12.fs: domain 1 of 1, from 1109 to 1175: score 78.3, E = 6.5e-21 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++WvpD +s+C++C +F l kRrHHCR+CG++fC C+ ++++ KIAA0647 1109 TRWVPDHMASHCYNCDCEFW-LAKRRHHCRNCGNVFCAGCCHLKLPI 1154 pylgiaallkndviekpvRVCdsCydrlnk<-* p ++ + pv VC+sCy++ + KIAA0647 1155 PDQQL---------YDPVLVCNSCYEHIQV 1175 PF01363.12.ls: domain 1 of 1, from 1109 to 1175: score 80.1, E = 6.4e-21 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++WvpD +s+C++C +F l kRrHHCR+CG++fC C+ ++++ KIAA0647 1109 TRWVPDHMASHCYNCDCEFW-LAKRRHHCRNCGNVFCAGCCHLKLPI 1154 pylgiaallkndviekpvRVCdsCydrlnk<-* p ++ + pv VC+sCy++ + KIAA0647 1155 PDQQL---------YDPVLVCNSCYEHIQV 1175 //