hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08525864/chunk_1/iprscan-20080502-08525864.nocrc
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Query sequence: KIAA0641
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 209.8    2.5e-58   1
SM00220                                                 110.2    2.3e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      77   347 ..     1   280 []   209.8  2.5e-58
SM00220    1/1      77   350 ..     1   231 []   110.2  2.3e-28

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 77 to 347: score 209.8, E = 2.5e-58
                   *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda....keeFl
                      l  +k++G+G FG+V++G+ +++ ++ +V VK L+++a+ ++++ Fl
    KIAA0641    77    LLYLKEIGRGWFGKVFLGEVNsgissAQVVVKELQASAsvqeQMQFL 123  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                   +E +  + l  kH N++++l+ c e         P+++vmE++++GdL+ 
    KIAA0641   124 EEVQPYRAL--KHSNLLQCLAQCAEV-------TPYLLVMEFCPLGDLKG 164  

                   yLrknrpk....lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvg
                   yLr++r  ++    +++L  +A  +A+G  +L+++nfvH DLA RNcL++
    KIAA0641   165 YLRSCRVAesmaPDPRTLQRMACEVACGVLHLHRNNFVHSDLALRNCLLT 214  

                   enkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEs
                   ++++vKI+D GL+   y +       dy +++   +    +P+rW APE 
    KIAA0641   215 ADLTVKIGDYGLAHCKYRE-------DYFVTAD--QLW--VPLRWIAPEL 253  

                   l..........kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsn
                    ++ +++    +  k      VWS GV++WE+f lG qPYp       s+
    KIAA0641   254 VdevhsnllvvDQTKSGN---VWSLGVTIWELFELGTQPYPQ-----HSD 295  

                   eevleylkkGyRlpkPendlpiSs..vtCPdelYdlMlqCWaedPedRPt
                   ++vl+y  +   l+ P+        + t +d  Y++M+ CW   Pe+RPt
    KIAA0641   296 QQVLAYTVREQQLKLPKP-----QlqLTLSDRWYEVMQFCWLQ-PEQRPT 339  

                   Fselverl<-*
                    +e++ +l   
    KIAA0641   340 AEEVHLLL    347  

SM00220: domain 1 of 1, from 77 to 350: score 110.2, E = 2.3e-28
                   *->YellkklGkGaFGkVylardkk..tgrlvAiKvik........eril
                         lk++G+G FGkV+l+  +++ +  +v +K++  + + +++ ++l
    KIAA0641    77    LLYLKEIGRGWFGKVFLGEVNSgiSSAQVVVKELQasasvqeqMQFL 123  

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                    E++  +  +H N+ +++  + + + + lVmE+c+   GdL+ +l++++ 
    KIAA0641   124 EEVQPYRAlKHSNLLQCLAQCAEvTPYLLVMEFCPL--GDLKGYLRSCRV 171  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                          ++++ +++++++++++ +LH+++++H DL   N LL+ + +vK
    KIAA0641   172 AES-MAPDPrTLQRMACEVACGVLHLHRNNFVHSDLALRNCLLTAdlTVK 220  

                   laDFGlArql.........ttfvGTpeYmAPEvl..........gYgkpa
                   ++D GlA    +++   + + + + + ++APE++++ +++      +k +
    KIAA0641   221 IGDYGLAHCKyredyfvtaDQLWVPLRWIAPELVdevhsnllvvDQTK-S 269  

                   vDiWSlGcilyEllt.GkpPFp...qldlifkkig...............
                     +WSlG++++El+  G  P+p++++++++   +++   + +++    + 
    KIAA0641   270 GNVWSLGVTIWELFElGTQPYPqhsDQQVLAYTVReqqlklpkpqlqltl 319  

                   SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   S+   + ++ ++   Pe+R+ta+e+        +  ++   
    KIAA0641   320 SDRWYEVMQFCWL-QPEQRPTAeEVHL------LLSYL    350  

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