hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08493921/chunk_1/iprscan-20080502-08493921.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0639
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 612.3   1.7e-179   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      12   370 ..     1   404 []   612.3 1.7e-179

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 12 to 370: score 612.3, E = 1.7e-179
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv...tvtvn....
                       ++++VavR+   RP n+rE++ +     ++vv+v+ ++v++n+ ++
    KIAA0639    12    DSKVKVAVRI---RPMNRRETDLH----TKCVVDVdanKVILNpvnt 51   

                   .............FtFDkVFWry.d.vddpsasQedVFeevaaPLvdsal
                   + ++++ +++++ F +D++FW  +++v   +a Q+ VF+ ++  ++++a+
    KIAA0639    52 nlskgdargqpkvFAYDHCFWSMdEsVKEKYAGQDIVFKCLGENILQNAF 101  

                   dGYNvaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRa
                   dGYN+ +IFAYGQTGSGK+yTM+Gt                d+pG+IPR 
    KIAA0639   102 DGYNA-CIFAYGQTGSGKSYTMMGTA---------------DQPGLIPRL 135  

                   ledlFekide.......fsVkvSylEIYNEkirDLLspspenSksrGkha
                   +  lFe+ +++++++++f+V+vSy+EIYNEk+rDLL+p+ ++        
    KIAA0639   136 CSGLFERTQKeeneeqsFKVEVSYMEIYNEKVRDLLDPKGSR-------- 177  

                   kqsskkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevl
                        + L++rE++                 g+yV+GL+   V+S+ +++
    KIAA0639   178 -----QTLKVREHSV---------------LGPYVDGLSKLAVTSYKDIE 207  

                   ellerGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesst
                   +l+ +Gnk+RtvaaT+mNeeSSRSHa+F itl+ +               
    KIAA0639   208 SLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHT-----------LYDV 246  

                   negteqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGn
                    +gt+  k++kL+LVDLAGSERa+kTg  a+GdRLkE+ nINkSL++LG 
    KIAA0639   247 KSGTSGEKVGKLSLVDLAGSERATKTG--AAGDRLKEGSNINKSLTTLGL 294  

                   VInALaddshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTl
                   VI+ALad          +   + k++++PYRDS+LT+LL+dSLGGNsKT+
    KIAA0639   295 VISALAD----------QSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTA 334  

                   MIanvSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                   M+a+vSP+++ny+ETlsTLr+A+Rak I+n+++vne   
    KIAA0639   335 MVATVSPAADNYDETLSTLRYADRAKHIVNHAVVNE    370  

//