hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08443877/chunk_1/iprscan-20080502-08443877.nocrc
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Query sequence: KIAA0636
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 115.5    6.1e-30   2
SM00327                                                  73.1    3.5e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2      10   117 ..     1    92 []    54.1  1.8e-11
SM00239    2/2     142   248 ..     1    92 []    61.3  1.2e-13
SM00327    1/1     292   494 ..     1   193 []    73.1  3.5e-17

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 10 to 117: score 54.1, E = 1.8e-11
                   *->tLtvkiisArnLp........DPYVkvs............kTkvvkk
                      t     +s+ nL +++ ++++DP ++++ ++++++     +T+ +k+
    KIAA0636    10    TKVALNVSCANLLdkdigsksDPLCVLFlntsgqqwyeveRTERIKN 56   

                   tlsgfNPvWnEesetFeFevpp...s.LeieVyDk..........dfiGr
                   +l   NP++     tF ++   +  ++L++ VyD ++++ + +++df+G+
    KIAA0636    57 CL---NPQFSK---TFIIDYYFevvQkLKFGVYDIdnktielsddDFLGE 100  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   +++               l ++ ++ + ++    
    KIAA0636   101 CECT--------------LGQIVsSKKLtRP    117  

SM00239: domain 2 of 2, from 142 to 248: score 61.3, E = 1.2e-13
                   *->tLtvkiisArnLp........DPYVkvs............kTkvvkk
                      ++ +  ++Ar L +++  +++DPY ++++++++++    ++T+vvk+
    KIAA0636   142    RVVLFEMEARKLDnkdlfgksDPYLEFHkqtsdgnwlmvhRTEVVKN 188  

                   tlsgfNPvWnEesetFeFevpp.......s.LeieVyDk......dfiGr
                   +l   NPvW      F++++++   ++ ++++++e+yD+++++++d+iG+
    KIAA0636   189 NL---NPVWR----PFKISLNSlcygdmdKtIKVECYDYdndgshDLIGT 231  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++                +++l++  r+++    
    KIAA0636   232 FQTT--------------MTKLKeASRSsPV    248  

SM00327: domain 1 of 1, from 292 to 494: score 73.1, E = 3.5e-17
                   *->plDvvfllDgSgSmg...............gnrfekvkefv.klveq
                      +l++++ +D +gS g+++++++ +  ++++ n + +++  v+ ++++
    KIAA0636   292    QLNFTVGVDFTGSNGdprspdslhyispngVNEYLTALWSVgLVIQD 338  

                   ld.gdrvglvqFss......dvrvefpln.......sqskdallealasl
                    d +  + + +F+ + +++ +v +efp+n +++++ ++  + ++ea +s 
    KIAA0636   339 YDaDKMFPAFGFGAqippqwQVSHEFPMNfnpsnpyCNGIQGIVEAYRSC 388  

                   sykglkdyslgggTnlg.ALqyalenlfsesag.rrgagratkiSnvpkv
                    +    +++l+g+Tn+ + ++++++ + ++++ + +             v
    KIAA0636   389 LP----QIKLYGPTNFSpIINHVARFAAAATQQqTASQ---------YFV 425  

                   liliTDGesndggddpedileaakelkrsgvkvfvigvgnade.elkeia
                   l++iTDG  +    d++++++a+ ++ r   +++++gvg+ad++ ++ ++
    KIAA0636   426 LLIITDGVIT----DLDETRQAIVNASRLPMSIIIVGVGGADFsAMEFLD 471  

                   sep.gehvffdvsdvedlpslldllidlll<-*
                   +++++++ +         + +++++++++    
    KIAA0636   472 GDGgSLRSPL-------GEVAIRDIVQFVP    494  

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