hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08443877/chunk_1/iprscan-20080502-08443877.nocrc
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Query sequence: KIAA0636
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07002.6.ls Copine                                         344.6   1.5e-100   1
PF07002.6.fs Copine                                         342.7   5.7e-100   1
PF00168.20.fs C2 domain                                      134.3    2.2e-39   2
PF00168.20.ls C2 domain                                      138.3      2e-38   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.fs   1/2      12   102 ..     1    88 []    62.5  5.1e-18
PF00168.20.ls   1/2      12   102 ..     1    88 []    64.4  3.3e-16
PF00168.20.fs   2/2     143   233 ..     1    88 []    71.8  8.2e-21
PF00168.20.ls   2/2     143   233 ..     1    88 []    73.8  4.9e-19
PF07002.6.fs   1/1     313   460 ..     1   160 []   342.7 5.7e-100
PF07002.6.ls   1/1     313   460 ..     1   160 []   344.6 1.5e-100

Alignments of top-scoring domains:
PF00168.20.fs: domain 1 of 2, from 12 to 102: score 62.5, E = 5.1e-18
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvik
                      + ++v +A+ L + D +++ksDP ++++l+  ++ q+ +  +T+ ik
    KIAA0636    12    VALNVSCANLLDK-D-IGSKSDPLCVLFLNTSGQ-QWyevERTERIK 55   

                   ktlNPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-
                   ++lNP++  tF ++  ++ +q+ L++ VyD d ++ + ++ddflGe++  
    KIAA0636    56 NCLNPQFSKTFIIDYYFEVVQK-LKFGVYDIDNKTIelsdDDFLGECE   102  

                   *
                    
    KIAA0636     -   -    

PF00168.20.ls: domain 1 of 2, from 12 to 102: score 64.4, E = 3.3e-16
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvik
                      + ++v +A+ L + D +++ksDP ++++l+  ++ q+ +  +T+ ik
    KIAA0636    12    VALNVSCANLLDK-D-IGSKSDPLCVLFLNTSGQ-QWyevERTERIK 55   

                   ktlNPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-
                   ++lNP++  tF ++  ++ +q+ L++ VyD d ++ + ++ddflGe++  
    KIAA0636    56 NCLNPQFSKTFIIDYYFEVVQK-LKFGVYDIDNKTIelsdDDFLGECE   102  

                   *
                    
    KIAA0636     -   -    

PF00168.20.fs: domain 2 of 2, from 143 to 233: score 71.8, E = 8.2e-21
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvik
                      +++  +eA+ L +kD ++gksDPY +++    ++ ++   ++T+v+k
    KIAA0636   143    VVLFEMEARKLDNKD-LFGKSDPYLEFHKQTSDG-NWlmvHRTEVVK 187  

                   ktlNPvWN.EtFtFe.vpppdlqetLeieVyDydrfgrddflGevs<-*
                   ++lNPvW + +  ++++ + d+++t+++e+yDyd +g++d++G+++   
    KIAA0636   188 NNLNPVWRpFKISLNsLCYGDMDKTIKVECYDYDNDGSHDLIGTFQ    233  

PF00168.20.ls: domain 2 of 2, from 143 to 233: score 73.8, E = 4.9e-19
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvik
                      +++  +eA+ L +kD ++gksDPY +++    ++ ++   ++T+v+k
    KIAA0636   143    VVLFEMEARKLDNKD-LFGKSDPYLEFHKQTSDG-NWlmvHRTEVVK 187  

                   ktlNPvWN.EtFtFe.vpppdlqetLeieVyDydrfgrddflGevs<-*
                   ++lNPvW + +  ++++ + d+++t+++e+yDyd +g++d++G+++   
    KIAA0636   188 NNLNPVWRpFKISLNsLCYGDMDKTIKVECYDYDNDGSHDLIGTFQ    233  

PF07002.6.fs: domain 1 of 1, from 313 to 460: score 342.7, E = 5.7e-100
                   *->SLHyIsprqpNpYeqAIravGeiLqdYDsDklfPAfGFGAklPpdys
                      SLHyIsp+ +N+Y++A+++vG ++qdYD+Dk+fPAfGFGA++Pp+++
    KIAA0636   313    SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQ 359  

                   VsHdedvFpLnfnpedpeCnGleGVleaYrealpnvqLsGPTnFaPiIna
                   VsH+   Fp+nfnp++p+CnG++G++eaYr++lp+++L+GPTnF+PiIn+
    KIAA0636   360 VSHE---FPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINH 406  

                   aariAeas.stqkggqYhVLlIiTDGqvTrsvDteGLSpDmkeTidAIVs
                   +ar+A+a++++q+++qY+VLlIiTDG++T          D++eT++AIV+
    KIAA0636   407 VARFAAAAtQQQTASQYFVLLIITDGVIT----------DLDETRQAIVN 446  

                   ASdlPLSIIiVGVG<-*
                   AS+lP+SIIiVGVG   
    KIAA0636   447 ASRLPMSIIIVGVG    460  

PF07002.6.ls: domain 1 of 1, from 313 to 460: score 344.6, E = 1.5e-100
                   *->SLHyIsprqpNpYeqAIravGeiLqdYDsDklfPAfGFGAklPpdys
                      SLHyIsp+ +N+Y++A+++vG ++qdYD+Dk+fPAfGFGA++Pp+++
    KIAA0636   313    SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQ 359  

                   VsHdedvFpLnfnpedpeCnGleGVleaYrealpnvqLsGPTnFaPiIna
                   VsH+   Fp+nfnp++p+CnG++G++eaYr++lp+++L+GPTnF+PiIn+
    KIAA0636   360 VSHE---FPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINH 406  

                   aariAeas.stqkggqYhVLlIiTDGqvTrsvDteGLSpDmkeTidAIVs
                   +ar+A+a++++q+++qY+VLlIiTDG++T          D++eT++AIV+
    KIAA0636   407 VARFAAAAtQQQTASQYFVLLIITDGVIT----------DLDETRQAIVN 446  

                   ASdlPLSIIiVGVG<-*
                   AS+lP+SIIiVGVG   
    KIAA0636   447 ASRLPMSIIIVGVG    460  

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