hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08412441/chunk_1/iprscan-20080502-08412441.nocrc
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Query sequence: KIAA0634
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.ls Fibronectin type III domain                     12.2     0.0088   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00041.11.ls   1/1    1048  1164 ..     1    84 []    12.2   0.0088

Alignments of top-scoring domains:
PF00041.11.ls: domain 1 of 1, from 1048 to 1164: score 12.2, E = 0.0088
                   *->PsaPtnltvtdv.tstsltlsWspPt..gngpitgYevtyRqpkngg
                      + ++ +l+ t  ++st ++l+W    +  + +++ Y ++  +++++ 
    KIAA0634  1048    LQPVLRLSPTVEpSSTVVSLEWVDVQpaIGTKVSDYILQH-KKVDEY 1093 

                   e............................wkeltvpgttt.sytltgLkP
                    +++  +++  +  ++  ++ +++    +  +  vp ++  s++++ L+P
    KIAA0634  1094 TdtdlytgeflsfaddllsglgtscvaagRSHGEVPEVSIySVIFKCLEP 1143 

                   gteYtvrVqAvnggG..GpeS<-*
                   +  Y+++++Av++ G++++ S   
    KIAA0634  1144 DGLYKFTLYAVDTRGrhSELS    1164 

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