# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh01881s1.fasta.huge -Q ../query/KIAA0631.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0631, 729 aa vs ./tmplib.23663 library 1986776 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.4427+/-0.00482; mu= 17.5196+/- 0.328 mean_var=83.3515+/-19.452, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.140481 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0837 ( 745 res) hj06536 ( 745) 565 124.9 2.8e-29 >>KIAA0837 ( 745 res) hj06536 (745 aa) initn: 485 init1: 221 opt: 565 Z-score: 617.5 bits: 124.9 E(): 2.8e-29 Smith-Waterman score: 622; 26.021% identity (55.371% similar) in 661 aa overlap (93-724:116-741) 70 80 90 100 110 KIAA06 NHALELSVPEKVNNAQWDAPEEALWTTRADGRVRLRIDPSCPQL-------PYTVHRMFY : .: . : ::: :....: KIAA08 AILAYWFTHRPKALQPPCNLLMQSEEVEDSGGARRSVIGSGPQLLTHYYDDARTMYQVFR 90 100 110 120 130 140 120 130 140 150 160 170 KIAA06 EALDKYGDLIALGFKR-QDKWEHISYSQYYLLARRAAKGFLKLGLKQAHS--VAILGFNS ..:. :. :::.. .. .. .::.. :. ..:.:. . : . ..... : KIAA08 RGLSISGNGPCLGFRKPKQPYQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNR 150 160 170 180 190 200 180 190 200 210 220 KIAA06 PEWFFSAVGTVFAGGIVTGIYTTSSPEACQYIAYDCCANVIMVDTQKQ----LEKILKIW :::.. .. . .:. .: : .: : .:: ....:: .. ::.. . KIAA08 PEWIIVELACYTYSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVER-- 210 220 230 240 250 260 230 240 250 260 270 280 KIAA06 KQLPHLKAVVI---YKEPPPNKMANVYTMEEFMELGNEVPEEALDAIIDTQQPNQCCVLV :. : :: ... ..: .. . .. . :. .. .: .: . : :.. .. KIAA08 KETPGLKLIILMDPFEEALKERGQKCGVVIKSMQAVEDCGQENHQAPVPPQ-PDDLSIVC 270 280 290 300 310 320 290 300 310 320 330 340 KIAA06 YTSGTTGNPKGVMLSQDNIT--WTARYGSQAGDIRPAEVQQEVVVSYLPLSHIAAQIYDL .::::::::::.::.. :.. ... : : :..:..:.:::.:. .. . KIAA08 FTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPR--QDDVLISFLPLAHMFERVIQS 330 340 350 360 370 380 350 360 370 380 390 400 KIAA06 WTGIQWGAQVCFAEPDALKGSLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRR . . :..: : . : : . .. . :: :::. ......: : ..: KIAA08 VVYCH-GGRVGFFQGDIR--LLSDDMKALCPTIFPVVPRLLNRMYDKIFSQANTP--LKR 390 400 410 420 430 410 420 430 440 450 460 KIAA06 KMLLWAMSVTLEQNLTCPGSDLKPFTTRLADYLVLAKVRQALGFAKCQKNFY-GAAPMMA : . . ... . : . . . : : . :.. .:: : . . :::: KIAA08 ----WLLEFAAKRKQAEVRSGIIR-NDSIWDELFFNKIQASLG--GCVRMIVTGAAPASP 440 450 460 470 480 470 480 490 500 510 KIAA06 ETQHFF-LGLNIRLYAGYGLSETSGPHFMSSPYNYRLYSSGKLVPGCRVKLVNQDA---- . :. .:. ..: ::: .: .. ...: .. : .: ..:::. . KIAA08 TVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKLVDVEELNYW 490 500 510 520 530 540 520 530 540 550 560 570 KIAA06 --EGIGEICLWGRTIFMGYLNMEDKTCEAIDEEGWLHTGDAGRLDADGFLYITGRLKELI .: ::::. : ..: :::. :.: ::.: .::::::: :. : : : : :... KIAA08 ACKGEGEICVRGPNVFKGYLKDPDRTKEALDSDGWLHTGDIGKWLPAGTLKIIDRKKHIF 550 560 570 580 590 600 580 590 600 610 620 630 KIAA06 ITAGGENVPPVPIEEAVKMELPIISNAMLIGDQRK-FLSMLLTLKCTLDPDTSDQTDNLT : :: : : ::. :. .. .. ::. : :: ... :: KIAA08 KLAQGEYVAPEKIENIYIRSQPV-AQIYVHGDSLKAFLVGIVV------PDP-------- 610 620 630 640 650 640 650 660 670 680 690 KIAA06 EQAVEFCQRVGSRATTVSEIIEKKDEAVYQAIEEGIRRVNMNAAARPYHIQKWAILERD- : . :. : ..: ... .:: . .:: : . :.. ... . .. : .. : KIAA08 EVMPSWAQKRGIEGT-YADLCTNKD--LKKAILEDMVRLGKESGLHSFEQVKAIHIHSDM 660 670 680 690 700 710 700 710 720 KIAA06 FSISGGELGPTMKLKRLTVLEKYKGIIDSFYQEQKM ::...: : ::.: :: . : .: :. .: KIAA08 FSVQNGLLTPTLKAKRPELREYFKKQIEELYSISM 720 730 740 729 residues in 1 query sequences 1986776 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:57 2008 done: Thu Dec 18 15:09:58 2008 Total Scan time: 0.560 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]