hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08311940/chunk_1/iprscan-20080502-08311940.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0628 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 444.3 1.5e-130 13 PF00096.16.fs Zinc finger, C2H2 type 418.7 7.7e-123 13 PF01096.9.fs Transcription factor S-II (TFIIS) 59.1 1.3e-17 12 PF01286.9.fs XPA protein N-terminal 38.5 3.2e-10 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/13 127 149 .. 1 24 [] 25.5 4.1e-05 PF00096.16.ls 1/13 127 149 .. 1 24 [] 27.5 4.4e-05 PF00096.16.fs 2/13 155 177 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 2/13 155 177 .. 1 24 [] 33.7 6.1e-07 PF00096.16.fs 3/13 183 205 .. 1 24 [] 28.1 9.6e-06 PF00096.16.ls 3/13 183 205 .. 1 24 [] 30.0 7.5e-06 PF00096.16.ls 4/13 211 233 .. 1 24 [] 34.6 3.1e-07 PF00096.16.fs 4/13 211 233 .. 1 24 [] 32.7 6.8e-07 PF00096.16.fs 5/13 239 261 .. 1 24 [] 36.7 6.8e-08 PF00096.16.ls 5/13 239 261 .. 1 24 [] 38.7 1.9e-08 PF00096.16.fs 6/13 267 289 .. 1 24 [] 34.4 2.5e-07 PF00096.16.ls 6/13 267 289 .. 1 24 [] 36.4 9.4e-08 PF00096.16.fs 7/13 295 317 .. 1 24 [] 36.3 8.8e-08 PF00096.16.ls 7/13 295 317 .. 1 24 [] 38.2 2.6e-08 PF00096.16.ls 8/13 323 345 .. 1 24 [] 35.8 1.4e-07 PF00096.16.fs 8/13 323 345 .. 1 24 [] 33.9 3.5e-07 PF00096.16.ls 9/13 351 373 .. 1 24 [] 37.4 4.5e-08 PF00096.16.fs 9/13 351 373 .. 1 24 [] 35.4 1.4e-07 PF00096.16.ls 10/13 379 401 .. 1 24 [] 32.8 1.1e-06 PF00096.16.fs 10/13 379 401 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 11/13 407 429 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 11/13 407 429 .. 1 24 [] 31.0 1.8e-06 PF00096.16.fs 12/13 435 457 .. 1 24 [] 29.7 3.7e-06 PF00096.16.ls 12/13 435 457 .. 1 24 [] 31.7 2.4e-06 PF00096.16.fs 13/13 463 485 .. 1 24 [] 32.5 7.5e-07 PF00096.16.ls 13/13 463 485 .. 1 24 [] 34.5 3.5e-07 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 13, from 127 to 149: score 25.5, E = 4.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* C+ +Cgk+F+ +s+L rH+ +H KIAA0628 127 NPCD-ICGKTFTFNSDLVRHRISH 149 PF00096.16.ls: domain 1 of 13, from 127 to 149: score 27.5, E = 4.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* C+ +Cgk+F+ +s+L rH+ +H KIAA0628 127 NPCD-ICGKTFTFNSDLVRHRISH 149 PF00096.16.fs: domain 2 of 13, from 155 to 177: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++s+L H+r+H KIAA0628 155 YTCD-QCGKGFGQSSHLMEHQRIH 177 PF00096.16.ls: domain 2 of 13, from 155 to 177: score 33.7, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++s+L H+r+H KIAA0628 155 YTCD-QCGKGFGQSSHLMEHQRIH 177 PF00096.16.fs: domain 3 of 13, from 183 to 205: score 28.1, E = 9.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + s L H+r+H KIAA0628 183 YVCN-VCGKDFIHYSGLIEHQRVH 205 PF00096.16.ls: domain 3 of 13, from 183 to 205: score 30.0, E = 7.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + s L H+r+H KIAA0628 183 YVCN-VCGKDFIHYSGLIEHQRVH 205 PF00096.16.ls: domain 4 of 13, from 211 to 233: score 34.6, E = 3.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+F+++s+L rH+r+H KIAA0628 211 FKCA-QCGKAFCHSSDLIRHQRVH 233 PF00096.16.fs: domain 4 of 13, from 211 to 233: score 32.7, E = 6.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk+F+++s+L rH+r+H KIAA0628 211 FKCA-QCGKAFCHSSDLIRHQRVH 233 PF00096.16.fs: domain 5 of 13, from 239 to 261: score 36.7, E = 6.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk Fs++s L rH+r+H KIAA0628 239 FECK-ECGKGFSQSSLLIRHQRIH 261 PF00096.16.ls: domain 5 of 13, from 239 to 261: score 38.7, E = 1.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk Fs++s L rH+r+H KIAA0628 239 FECK-ECGKGFSQSSLLIRHQRIH 261 PF00096.16.fs: domain 6 of 13, from 267 to 289: score 34.4, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF r+s+L rH ++H KIAA0628 267 YECN-ECGKSFIRSSSLIRHYQIH 289 PF00096.16.ls: domain 6 of 13, from 267 to 289: score 36.4, E = 9.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF r+s+L rH ++H KIAA0628 267 YECN-ECGKSFIRSSSLIRHYQIH 289 PF00096.16.fs: domain 7 of 13, from 295 to 317: score 36.3, E = 8.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s+L H+r+H KIAA0628 295 YECK-ECGKAFRHRSDLIEHQRIH 317 PF00096.16.ls: domain 7 of 13, from 295 to 317: score 38.2, E = 2.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s+L H+r+H KIAA0628 295 YECK-ECGKAFRHRSDLIEHQRIH 317 PF00096.16.ls: domain 8 of 13, from 323 to 345: score 35.8, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F r+s L +H+r+H KIAA0628 323 FECN-ECGKAFIRSSKLIQHQRIH 345 PF00096.16.fs: domain 8 of 13, from 323 to 345: score 33.9, E = 3.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F r+s L +H+r+H KIAA0628 323 FECN-ECGKAFIRSSKLIQHQRIH 345 PF00096.16.ls: domain 9 of 13, from 351 to 373: score 37.4, E = 4.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ sn+++H+r+H KIAA0628 351 YVCN-ECGKRFSQTSNFTQHQRIH 373 PF00096.16.fs: domain 9 of 13, from 351 to 373: score 35.4, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ sn+++H+r+H KIAA0628 351 YVCN-ECGKRFSQTSNFTQHQRIH 373 PF00096.16.ls: domain 10 of 13, from 379 to 401: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s L rH+++H KIAA0628 379 YECN-ECGKAFFLSSYLIRHQKIH 401 PF00096.16.fs: domain 10 of 13, from 379 to 401: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s L rH+++H KIAA0628 379 YECN-ECGKAFFLSSYLIRHQKIH 401 PF00096.16.ls: domain 11 of 13, from 407 to 429: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +k++L+ H+++H KIAA0628 407 YECK-ECGKAFLQKAHLTEHQKIH 429 PF00096.16.fs: domain 11 of 13, from 407 to 429: score 31.0, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +k++L+ H+++H KIAA0628 407 YECK-ECGKAFLQKAHLTEHQKIH 429 PF00096.16.fs: domain 12 of 13, from 435 to 457: score 29.7, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F ++s L H+ +H KIAA0628 435 FECK-DCGKAFIQSSKLLLHQIIH 457 PF00096.16.ls: domain 12 of 13, from 435 to 457: score 31.7, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F ++s L H+ +H KIAA0628 435 FECK-DCGKAFIQSSKLLLHQIIH 457 PF00096.16.fs: domain 13 of 13, from 463 to 485: score 32.5, E = 7.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++sn+ +H+++H KIAA0628 463 YVCS-YCGKGFIQRSNFLQHQKIH 485 PF00096.16.ls: domain 13 of 13, from 463 to 485: score 34.5, E = 3.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++sn+ +H+++H KIAA0628 463 YVCS-YCGKGFIQRSNFLQHQKIH 485 //