# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00753.fasta.huge -Q ../query/KIAA0626.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0626, 433 aa vs ./tmplib.23663 library 1987072 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.6889+/-0.00572; mu= 9.9642+/- 0.389 mean_var=131.4419+/-31.877, 0's: 0 Z-trim: 10 B-trim: 13 in 1/39 Lambda= 0.111868 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1497 ( 730 res) hg01608 ( 730) 164 37.9 0.0025 KIAA0756 ( 1222 res) ff01911 (1222) 164 38.2 0.0035 KIAA1484 ( 700 res) fj06928 ( 700) 156 36.6 0.0059 >>KIAA1497 ( 730 res) hg01608 (730 aa) initn: 54 init1: 54 opt: 164 Z-score: 151.6 bits: 37.9 E(): 0.0025 Smith-Waterman score: 164; 24.031% identity (65.116% similar) in 129 aa overlap (78-204:447-569) 50 60 70 80 90 100 KIAA06 TLATAKSVTNSTLNGTNVVLGSVPVIIARTDHIIVKEGNSALINCSVYGIPDPQFKWYNS ... : :......: ... :.:.. : . KIAA14 PEYKGHQVKEVLIQDSSEQCLPMISHDSFPNRLNVDIGTTVFLDCRAMAEPEPEIYWVTP 420 430 440 450 460 470 110 120 130 140 150 160 KIAA06 IGKLLKEEEDEKERGGGKWQMHDSGLLNITKVSFSDRGKYTCVASNIYGTVNNTVTLRV- ::. . : . :... . : :.:..... : :.:::::.:. :. . ..:..: KIAA14 IGNKITVETL-----SDKYKLSSEGTLEISNIQIEDSGRYTCVAQNVQGADTRVATIKVN 480 490 500 510 520 530 170 180 190 200 210 220 KIAA06 -IFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSHLKKTEKAINEFFRTEGAEKLQKA . .: . . .: . .:.. ... .:.:.:: KIAA14 GTLLDGTQVLKIYVKQTESHSILVSWKVNS-NVMTSNLKWSSATMKIDNPHITYTARVPV 540 550 560 570 580 590 230 240 250 260 270 280 KIAA06 FEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTIMEEIMEVV KIAA14 DVHEYNLTHLQPSTDYEVCLTVSNIHQQTQKSCVNVTTKNAAFAVDISDQETSTALAAVM 600 610 620 630 640 650 >>KIAA0756 ( 1222 res) ff01911 (1222 aa) initn: 152 init1: 125 opt: 164 Z-score: 149.1 bits: 38.2 E(): 0.0035 Smith-Waterman score: 168; 32.039% identity (60.194% similar) in 103 aa overlap (66-166:489-582) 40 50 60 70 80 90 KIAA06 FLPSVPFLILVSTLATAKSVTNSTLNGTNVVLGSVPVIIARTDHII-VKEGNSALINCSV :: : ... ...: : : . ..: KIAA07 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPF 460 470 480 490 500 510 100 110 120 130 140 150 KIAA06 YGIPDPQFKWY-NSIGKLLKEEEDEKERGGGKWQMHDSGLLNITKVSFSDRGKYTCVASN .: : : ..:. :. :. : ::.......: :.: . :.: :::::.: KIAA07 FGSPIPTLRWFKNGQGSNLD---------GGNYHVYENGSLEIKMIRKEDQGIYTCVATN 520 530 540 550 560 160 170 180 190 200 210 KIAA06 IYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSHLKKTEKAINEF : : ..: : :.: KIAA07 ILGKAENQVRLEVKDPTRIYRMPEDQVARRGTTVQLECRVKHDPSLKLTVSWLKDDEPLY 570 580 590 600 610 620 >>KIAA1484 ( 700 res) fj06928 (700 aa) initn: 74 init1: 51 opt: 156 Z-score: 144.9 bits: 36.6 E(): 0.0059 Smith-Waterman score: 156; 29.293% identity (55.556% similar) in 99 aa overlap (71-167:227-317) 50 60 70 80 90 KIAA06 PFLILVSTLATAKSVTNSTLNGTNVVLGSVPVIIART--DHIIVKEGNSALINCSVYGIP : .:.: . .: ::... . : . : : KIAA14 REDDLETCATPEHLTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDP 200 210 220 230 240 250 100 110 120 130 140 150 KIAA06 DPQFKWYNSIGKLLKEEEDEKERGGGKWQMHDSGLLNITKVSFSDRGKYTCVASNIYGTV .: .: :.:: . . :: .: :..: ... : : .::.::: : . KIAA14 EPVVHWVAPDGRLLGNSSRTRVRG--------DGTLDVTITTLRDSGTFTCIASNAAGEA 260 270 280 290 300 160 170 180 190 200 210 KIAA06 NNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITRLCMMSSHLKKTEKAINEFFRTEG . : . :. KIAA14 TAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGANDSAAERRLVAAELTSNSVL 310 320 330 340 350 360 433 residues in 1 query sequences 1987072 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:46 2008 done: Thu Dec 18 15:09:47 2008 Total Scan time: 0.410 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]