hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08183639/chunk_1/iprscan-20080502-08183639.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0621 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00324 228.0 8.2e-64 1 SM00326 60.8 1.7e-13 1 SM00233 41.6 1e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 205 310 .. 1 82 [] 41.6 1e-07 SM00324 1/1 326 504 .. 1 193 [] 228.0 8.2e-64 SM00326 1/1 698 753 .] 1 58 [] 60.8 1.7e-13 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 205 to 310: score 41.6, E = 1e-07 *->vikeGwLlkks....k.swkkryfvLfn....gvLlyyksk.....k ++eG+L+++++++ ++sw k+y++ +++++ +++ +++k+++++ KIAA0621 205 YTMEGYLYVQEkrhfGtSWVKHYCTYQRdskqITMVPFDQKsggkgG 251 pkgsipLsgcsvre.p......cFeivt.dr..tlllqAeseeereeWve +s+ L++c+ r++++ +++ cF + dr++++++qA see+r+ W+e KIAA0621 252 EDESVILKSCTRRKtDsiekrfCFDVEAvDRpgVITMQALSEEDRRLWME 301 alqsaiaka<-* a+ + KIAA0621 302 AMDGREPVY 310 SM00324: domain 1 of 1, from 326 to 504: score 228.0, E = 8.2e-64 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. s +i++kCi+++e+rG++++G+YR+ G++srv++L++ + ++ KIAA0621 326 SIGFSIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKTa 372 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie +++++d + e+++ +++++LK+yLR LP PL+ ++ ++ fi+ KIAA0621 373 SETETD--------ICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK 414 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL aakl e+ e r+ +++ l+++LP+ nr++L++L++HL KIAA0621 415 AAKL--------------ENQESRVSEIHSLVHRLPEKNRQMLQLLMnHL 450 nrVaehsevNkMtarNLAivFgPtLlrpp......ltdikhqnkvvetli ++Va+++++N+Mt+ NL++vFgPtLlrp++++ ++dik+qn+v+e+li KIAA0621 451 ANVANNHKQNLMTVANLGVVFGPTLLRPQeetvaaIMDIKFQNIVIEILI 500 enad<-* en++ KIAA0621 501 ENHE 504 SM00326: domain 1 of 1, from 698 to 753: score 60.8, E = 1.7e-13 *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke ++++AlY+++a+++ ELsF++G ++ + s+++gW+eG+ln Gk+ KIAA0621 698 RKAKALYACKAEHDSELSFTAGTVFDNVHPSqEPGWLEGTLN--GKT 742 GlfPsnYVeeie<-* Gl+P nYV e KIAA0621 743 GLIPENYV-EFL 753 //