hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08150962/chunk_1/iprscan-20080502-08150962.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0619 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 331.4 6.2e-95 1 SM00133 57.7 1.5e-12 1 SM00109 56.7 2.9e-12 1 SM00219 -29.0 2.4e-09 1 SM00233 34.1 1.9e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 132 388 .. 1 280 [] -29.0 2.4e-09 SM00220 1/1 132 394 .. 1 231 [] 331.4 6.2e-95 SM00133 1/1 397 457 .. 1 79 [] 57.7 1.5e-12 SM00233 1/1 1191 1391 .. 1 82 [] 34.1 1.9e-05 SM00109 1/1 1301 1355 .. 1 61 [] 56.7 2.9e-12 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 132 to 388: score -29.0, E = 2.4e-09 *->ltlgkkLGeGaFGeVykGtlk..ieV.AVKtLkeda......keeFl k++G+GaFGeV + + k +++V A K L + ++++ + F KIAA0619 132 YDVVKVIGRGAFGEVQLVRHKasQKVyAMKLLSKFEmikrsdSAFFW 178 rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld +E iM + p +V+L+ + ++ l++vmEym+gGdL + KIAA0619 179 EERDIMAFA--NSPWVVQLFYAFQDD-------RYLYMVMEYMPGGDLVN 219 yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv ++ ++ + + + + ++s++++HRD N L+++ ++ KIAA0619 220 LMSNYD--VPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGH 267 vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl... K +DFG + + ++ + + + g+ + +PE+l+++ KIAA0619 268 LKLADFGTCMKMDET-------GMVHCDTAVGTPD-----YISPEVLksq 305 .kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk.k + dg + + D WS GV L+E++ G++P + s + +++++ KIAA0619 306 gGDGFYGRECDWWSVGVFLYEML-VGDTPFYA-----DSLVGTYSKIMdH 349 GyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel......v + l Pe+++ ++ +l+ +e++ ++++v KIAA0619 350 KNSLCFPEDAE------ISKHAKNLICAFLTD--------REVrlgrngV 385 erl<-* e++ KIAA0619 386 EEI 388 SM00220: domain 1 of 1, from 132 to 394: score 331.4, E = 6.2e-95 *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril Y+++k++G+GaFG+V l+r+k +++++A+K +++ + +++++ ++ KIAA0619 132 YDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSkfemikrsdsAFFW 178 rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr E++i+ + P++V+L+++f+d+ +ly+VmEy++G GdL l+ ++ KIAA0619 179 EERDIMAFaNSPWVVQLFYAFQDdRYLYMVMEYMPG--GDLVNLMSNYD- 225 rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK +E++a+fy++++++aL+ +Hs+g iHRD+KP+N LLd+++h+K KIAA0619 226 ------VPEkWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKhgHLK 269 laDFGlArql........ttfvGTpeYmAPEvl.......gYgkpavDiW laDFG + ++++++ + +t vGTp+Y++PEvl+++++++ Yg+ ++D+W KIAA0619 270 LADFGTCMKMdetgmvhcDTAVGTPDYISPEVLksqggdgFYGR-ECDWW 318 SlGcilyElltGkpPFp..qldlifkkig..............SpeakdL S+G+ lyE+l+G +PF+ + l ++ ki++++++ +++ + S+ ak+L KIAA0619 319 SVGVFLYEMLVGDTPFYadSLVGTYSKIMdhknslcfpedaeiSKHAKNL 368 ikklLvkdPekRlta.eaLedeldikaHPff<-* i+ L+ d e Rl+ + + e i++HPff KIAA0619 369 ICAFLT-DREVRLGRnGVEE----IRQHPFF 394 SM00133: domain 1 of 1, from 397 to 457: score 57.7, E = 1.5e-12 *->rgiDWdkLenekkeiePPFkPkikeVyAsptDtsNFDkeFteetpvl +++ Wd+++ e+ +P +P+++ s++D sNFD+ ++++ +v+ KIAA0619 397 DQWHWDNIR----ETAAPVVPELS----SDIDSSNFDDIEDDKGDVE 435 tpvdsalsnsiqqeeaeteippdpFrGFsyvf<-* t + + ++ ++q + F+GF+y + KIAA0619 436 TFPIPKAFVGNQLP----------FIGFTYYR 457 SM00233: domain 1 of 1, from 1191 to 1391: score 34.1, E = 1.9e-05 *->vikeGwLlkks.....k.swkkryfvLfngvLlyyksk......kpk +eGwL+ +++++k +w k+y+++ ++ +l+y+s+++++++ p KIAA0619 1191 SRLEGWLSLPVrnntkKfGWVKKYVIVSSKKILFYDSEqdkeqsNPY 1237 gsipLsgc.svre.p................................... ++++++++ vr+ + + + + ++ ++ ++++++++ + + + KIAA0619 1238 MVLDIDKLfHVRPvTqtdvyradakeiprifqilyanegeskkeqefpve 1287 .................................................. + +++++ +++++ + + + + + ++ + ++++ + ++ + KIAA0619 1288 pvgeksnyichkghefiptlyhfptnceacmkplwhmfkpppalecrrch 1337 ....................cFeivt.drtlllqAeseeereeWvealqs + ++++ +++++ + + + i+t + lll A+s ee+++Wv+ l + KIAA0619 1338 ikchkdhmdkkeeiiapckvYYDISTaK-NLLLLANSTEEQQKWVSRLVK 1386 aiaka<-* i k KIAA0619 1387 KIPKK 1391 SM00109: domain 1 of 1, from 1301 to 1355: score 56.7, E = 2.9e-12 *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC H f+ + ++ pt+C+ C+k++w++fk+ +++l+C++C+ kcHk++ KIAA0619 1301 HEFIPTLYhFPTNCEACMKPLWHMFKP---PPALECRRCHIKCHKDH 1344 aekvpaqshksglsC<-* ++k ++ +++C KIAA0619 1345 MDKKEEI----IAPC 1355 //