# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh01733b.fasta.huge -Q ../query/KIAA0610.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0610, 686 aa
 vs ./tmplib.23663 library

1986819 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.7345+/-0.00733; mu= 8.3364+/- 0.501
 mean_var=184.3063+/-44.942, 0's: 0 Z-trim: 1  B-trim: 89 in 1/39
 Lambda= 0.094472

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1083  ( 584 res)   hj07423                     ( 584)  179 36.9  0.0066


>>KIAA1083  ( 584 res)   hj07423                          (584 aa)
 initn: 172 init1:  86 opt: 179  Z-score: 144.1  bits: 36.9 E(): 0.0066
Smith-Waterman score: 179;  30.000% identity (57.143% similar) in 140 aa overlap (1-135:81-215)

                                             10        20        30
KIAA06                               RPRRELSRQRRGARGLEGAEMEQEPQNGEP
                                     :  : :   .:.. .  .    . :     
KIAA10 YYFSYPLFVGFALLRLVAFHLGLLFVWLCQRFSRALMAAKRSSGAAPAPASASAPAPVPG
               60        70        80        90       100       110

               40        50           60        70        80       
KIAA06 AEIKIIREAYKKAFLFVNKGLNTDE---LGQKEEAKNYYKQGIGHLLRGISISSKESEHT
       .: . .:  .:.:: ... .:  ::    ::::.: ..::.:: .: .::..       :
KIAA10 GEAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIV-----T
              120       130       140       150       160          

        90         100       110       120       130       140     
KIAA06 GPGW--ESARQMQQKMKETLQNVRTRLEILEKGLATSLQNDLQEVPKLYPEFPPKDMCEK
       : :   : ::..: ::  .:  .. ::..::.: . . .. : .. .  :          
KIAA10 GQGEQCERARRLQAKMMTNLVMAKDRLQLLESGAVPKRKDPLTHTSNSLPRSKTVMKTGS
         170       180       190       200       210       220     

         150       160       170       180       190       200     
KIAA06 LPEPQSFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQSCPAEAPPAYTPQAAEGHYTV
                                                                   
KIAA10 AGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTATRKKKDLKNF
         230       240       250       260       270       280     




686 residues in 1 query   sequences
1986819 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:03 2008 done: Thu Dec 18 15:09:04 2008
 Total Scan time:  0.550 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]