hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07505026/chunk_1/iprscan-20080502-07505026.nocrc
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Query sequence: KIAA0605
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                 158.1    9.2e-43   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00209    1/7     130   186 ..     1    66 []    25.5   0.0072
SM00209    2/7     647   703 ..     1    66 []     9.0      1.1
SM00209    3/7     705   766 ..     1    66 []    23.8    0.024
SM00209    4/7     768   818 ..     1    66 []    11.2     0.61
SM00209    5/7     821   870 ..     1    66 []    31.6  0.00011
SM00209    6/7     877   935 ..     1    66 []    20.4    0.056
SM00209    7/7     937   988 ..     1    66 []    36.6  3.3e-06

Alignments of top-scoring domains:
SM00209: domain 1 of 7, from 130 to 186: score 25.5, E = 0.0072
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w+eW+ W++ S ++CGgG     v + +R    +c    +++  +g 
    KIAA0605   130    WGEWTKWTAFS-RSCGGG-----VTSQER----HCLQQRRKSV-PGP 165  

                   epCs......EtrpCntqpnLqpCp<-*
                   ++ + +++++ ++ C +q    +Cp   
    KIAA0605   166 GNRTctgtskRYQLCRVQ----ECP    186  

SM00209: domain 2 of 7, from 647 to 703: score 9.0, E = 1.1
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  s+  pCS +tC  G     v + +     +c++  +   ++++
    KIAA0605   647    RWKLSSHEPCS-ATCTTG-----VMSAYA----MCVRYDGV--EVDD 681  

                   epCs.......EtrpCntqpnLqpCp<-*
                   ++C+  +++++  + C ++    +C    
    KIAA0605   682 SYCDaltrpepVHEFCAGR----ECQ    703  

SM00209: domain 3 of 7, from 705 to 766: score 23.8, E = 0.024
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +e+s+WS+CS +tCG+G      + R+ +    c    +p      
    KIAA0605   705    RWETSSWSECS-RTCGEG-----YQFRVVR----CWKMLSP------ 735  

                   epCs................EtrpCntqpnLqpCp<-*
                   +  s+  ++  +  +  +++E ++C  +    +C    
    KIAA0605   736 GFDSsvysdlceaaeavrpeERKTCRNP----ACG    766  

SM00209: domain 4 of 7, from 768 to 818: score 11.2, E = 0.61
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +e seWS+C+ + CG+     +v tR        cs        ++
    KIAA0605   768    QWEMSEWSECT-AKCGER----SVVTRDI-----RCS-------EDE 797  

                   epCs......EtrpCntqpnLqpCp<-*
                   + C++++++   + C+++    pC+   
    KIAA0605   798 KLCDpntrpvGEKNCTGP----PCD    818  

SM00209: domain 5 of 7, from 821 to 870: score 31.6, E = 0.00011
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w+  s+W+pCSg +CG G     + +R+ +    c+   ++   +++
    KIAA0605   821    WT-VSDWGPCSG-SCGQG-----RTIRHVY----CKTSDGR--VVPE 854  

                   epCs.EtrpCntqpnLqpCp<-*
                   ++C+ Et+p   +    pC    
    KIAA0605   855 SQCQmETKPLAIH----PCG    870  

SM00209: domain 6 of 7, from 877 to 935: score 20.4, E = 0.056
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ++   +W  C   tCG+G     v++R    l +   + +p+    g
    KIAA0605   877    HWLAQDWERCN-TTCGRG-----VKKRLV--LCMELANGKPQT-RSG 914  

                   epCs......EtrpCntqpnLqpCp<-*
                   ++C   ++++E  +C+++    pC    
    KIAA0605   915 PECGlakkppEESTCFER----PCF    935  

SM00209: domain 7 of 7, from 937 to 988: score 36.6, E = 3.3e-06
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w  +s+WS+C+ +tCG G     vr+R  +    c  +         
    KIAA0605   937    WY-TSPWSECT-KTCGVG-----VRMRDVK----CYQG-----TDIV 967  

                   epCs......EtrpCntqpnLqpCp<-*
                   + C++  ++   ++C +q    pCp   
    KIAA0605   968 RGCDplvkpvGRQACDLQ----PCP    988  

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