hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07505026/chunk_1/iprscan-20080502-07505026.nocrc
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Query sequence: KIAA0605
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF05986.4.ls ADAM-TS Spacer 1                           190.0    5.3e-54   1
PF05986.4.fs ADAM-TS Spacer 1                           188.0    2.1e-53   1
PF00090.9.fs Thrombospondin type 1 domain                67.3    1.4e-19   7
PF08686.1.fs PLAC (protease and lacunin) domain          62.2    1.8e-16   1
PF08686.1.ls PLAC (protease and lacunin) domain          64.2    3.9e-16   1
PF00090.9.ls Thrombospondin type 1 domain                63.6    5.9e-16   4

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00090.9.ls   1/4     131   185 ..     1    55 []    16.3  0.00064
PF05986.4.fs   1/1     294   411 ..     1   128 []   188.0  2.1e-53
PF05986.4.ls   1/1     294   411 ..     1   128 []   190.0  5.3e-54
PF00090.9.ls   2/4     706   765 ..     1    55 []    13.1   0.0015
PF00090.9.ls   3/4     819   874 ..     1    55 []     9.3   0.0045
PF00090.9.ls   4/4     937   987 ..     1    55 []    24.9    6e-05
PF00090.9.fs   6/7     939   960 ..     3    24 ..    22.8  3.2e-06
PF08686.1.fs   1/1     995  1028 ..     1    35 []    62.2  1.8e-16
PF08686.1.ls   1/1     995  1028 ..     1    35 []    64.2  3.9e-16

Alignments of top-scoring domains:
PF00090.9.ls: domain 1 of 4, from 131 to 185: score 16.3, E = 0.00064
                   *->spWseWSpCSVTCGkGi........rtRqRvcnspaPqkkggepCtg
                      ++W+ W++ S +CG+G+++++++  ++R++++ +p     g+  Ctg
    KIAA0605   131    GEWTKWTAFSRSCGGGVtsqerhclQQRRKSVPGP-----GNRTCTG 172  

                   dvqeleteaCdmmdkC<-*
                   +  +   + C ++++C   
    KIAA0605   173 TSKR--YQLC-RVQEC    185  

PF05986.4.fs: domain 1 of 1, from 294 to 411: score 188.0, E = 2.1e-53
                   *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA
                      ++v+G ++k +++ GY  V++IPaGAr+I+I+E+kkS        LA
    KIAA0605   294    THVTGNYRKGNAHLGYSLVTHIPAGARDIQIVERKKSA-----DVLA 335  

                   LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt
                   L+ ++ G+ y++NGn++++ p++ f++aGTv++Y+r ++dv++t +E++ 
    KIAA0605   336 LADEA-GY-YFFNGNYKVDSPKN-FNIAGTVVKYRR-PMDVYETGIEYIV 381  

                   atGPtnepLivqvLfqggapnpgikYeYtiP<-*
                   a+GPtn+ L v+v+ q +++ p+i++eYt+    
    KIAA0605   382 AQGPTNQGLNVMVWNQ-NGKSPSITFEYTLL    411  

PF05986.4.ls: domain 1 of 1, from 294 to 411: score 190.0, E = 5.3e-54
                   *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA
                      ++v+G ++k +++ GY  V++IPaGAr+I+I+E+kkS        LA
    KIAA0605   294    THVTGNYRKGNAHLGYSLVTHIPAGARDIQIVERKKSA-----DVLA 335  

                   LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt
                   L+ ++ G+ y++NGn++++ p++ f++aGTv++Y+r ++dv++t +E++ 
    KIAA0605   336 LADEA-GY-YFFNGNYKVDSPKN-FNIAGTVVKYRR-PMDVYETGIEYIV 381  

                   atGPtnepLivqvLfqggapnpgikYeYtiP<-*
                   a+GPtn+ L v+v+ q +++ p+i++eYt+    
    KIAA0605   382 AQGPTNQGLNVMVWNQ-NGKSPSITFEYTLL    411  

PF00090.9.ls: domain 2 of 4, from 706 to 765: score 13.1, E = 0.0015
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe....
                       ++s WS+CS TCG+G + R+ +c ++      +++    + +  + 
    KIAA0605   706    WETSSWSECSRTCGEGYQFRVVRCWKML----SPGFDSSVYSDlcea 748  

                   ......leteaCdmmdkC<-*
                    +  ++ e + C + + C   
    KIAA0605   749 aeavrpEERKTC-RNPAC    765  

PF00090.9.ls: domain 3 of 4, from 819 to 874: score 9.3, E = 0.0045
                   *->spW..seWSpCSVTCGkGirtRqRvcnsp....aPqkkggepCtgdv
                       +W+ s W pCS +CG G ++R+ +c+  +++ +P     ++C +++
    KIAA0605   819    RQWtvSDWGPCSGSCGQGRTIRHVYCKTSdgrvVP----ESQCQMET 861  

                   qeleteaCdmmdkC<-*
                    +l +++C   + C   
    KIAA0605   862 KPLAIHPC-GDKNC    874  

PF00090.9.ls: domain 4 of 4, from 937 to 987: score 24.9, E = 6e-05
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqk..kggepCtgdvqele
                        +s+WS+C++TCG G+r+R  +c +        g  p++ +v +  
    KIAA0605   937    WYTSPWSECTKTCGVGVRMRDVKCYQGT--DivRGCDPLVKPVGR-- 979  

                   teaCdmmdkC<-*
                    +aC   ++C   
    KIAA0605   980 -QAC-DLQPC    987  

PF00090.9.fs: domain 6 of 7, from 939 to 960: score 22.8, E = 3.2e-06
                   *->WseWSpCSVTCGkGirtRqRvc<-*
                      +s+WS+C++TCG G+r+R  +c   
    KIAA0605   939    TSPWSECTKTCGVGVRMRDVKC    960  

PF08686.1.fs: domain 1 of 1, from 995 to 1028: score 62.2, E = 1.8e-16
                   *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-*
                      +C+D+p + nC+l+ +++LC+h+yYs++CCrSC+    
    KIAA0605   995    SCQDQPGT-NCALAIKVNLCGHWYYSKACCRSCRP    1028 

PF08686.1.ls: domain 1 of 1, from 995 to 1028: score 64.2, E = 3.9e-16
                   *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-*
                      +C+D+p + nC+l+ +++LC+h+yYs++CCrSC+    
    KIAA0605   995    SCQDQPGT-NCALAIKVNLCGHWYYSKACCRSCRP    1028 

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