# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj02980.fasta.huge -Q ../query/KIAA0597.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0597, 971 aa
 vs ./tmplib.23663 library

1986534 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.1401+/-0.00659; mu= 4.5909+/- 0.447
 mean_var=158.3291+/-36.543, 0's: 0 Z-trim: 3  B-trim: 7 in 1/39
 Lambda= 0.101928

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1399  ( 452 res)   hk07377                     ( 452)  197 41.5  0.0003


>>KIAA1399  ( 452 res)   hk07377                          (452 aa)
 initn: 152 init1: 152 opt: 197  Z-score: 168.2  bits: 41.5 E(): 0.0003
Smith-Waterman score: 197;  29.936% identity (49.045% similar) in 157 aa overlap (15-165:148-297)

                               10        20        30           40 
KIAA05                 VSLAFCQPLSLSLSPLLPLASSLAPERTHLPG---PGSLLLSPP
                                     :  ::  : . .    :.   :.::: :  
KIAA13 NNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGPATEPPASLLSSAS
       120       130       140       150       160       170       

                50        60        70        80        90         
KIAA05 S--FPARPREPRGCVTAAPPDKMDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQE
       :  :  .  : :  . ..  . : :    .::.:  .:  .  :  :: : ::.:  :: 
KIAA13 SDDFCKEKTEDRYSLGSSLDSGMRTP---LCRICF-QGPEQGELLSPCRCDGSVKCTHQP
       180       190       200           210       220       230   

     100       110       120       130       140       150         
KIAA05 CLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTL
       ::..:...     :::: ...    : :   :  :  : :   .. .. .:        :
KIAA13 CLIKWISERGCWSCELCYYKYHVIAI-STKNP--LQWQAISLTVIEKVQVAAAILGSLFL
           240       250        260         270       280       290

     160        170       180       190       200       210        
KIAA05 VA-FAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAF
       .: ..::                                                     
KIAA13 IASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYRIFKRWQAV
              300       310       320       330       340       350




971 residues in 1 query   sequences
1986534 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:08:34 2008 done: Thu Dec 18 15:08:34 2008
 Total Scan time:  0.650 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]