hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07340803/chunk_1/iprscan-20080502-07340803.nocrc
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Query sequence: KIAA0595
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     30.3    9.4e-08   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     28.7    1.9e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1    1547  1608 ..     1    69 [.    30.3  9.4e-08
PF00076.12.ls   1/1    1547  1613 ..     1    74 []    28.7  1.9e-05

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 1547 to 1608: score 30.3, E = 9.4e-08
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +f+g +p  +t+++Lk+ Fs fG+ie++ i         +  +++FV
    KIAA0595  1547    VFIGKIPGRMTRSELKQRFSVFGEIEECTIHFR-----VQGDNYGFV 1588 

                   eFedeedAekAldalnGkelgg<-*
                   ++   e+A +A++   G++l++   
    KIAA0595  1589 TYRYAEEAFAAIE--SGHKLRQ    1608 

PF00076.12.ls: domain 1 of 1, from 1547 to 1613: score 28.7, E = 1.9e-05
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +f+g +p  +t+++Lk+ Fs fG+ie++ i         +  +++FV
    KIAA0595  1547    VFIGKIPGRMTRSELKQRFSVFGEIEECTIHFR-----VQGDNYGFV 1588 

                   eFedeedAekAldalnGkelggrelrv<-*
                   ++   e+A +A++   G++l++        
    KIAA0595  1589 TYRYAEEAFAAIE--SGHKLRQADEQP    1613 

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