hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07322655/chunk_1/iprscan-20080502-07322655.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0594 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02463.9.ls RecF/RecN/SMC N terminal domain 10.4 1.7e-12 1 PF02463.9.fs RecF/RecN/SMC N terminal domain 25.6 4e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02463.9.fs 1/2 71 119 .. 1 54 [. 21.4 6.2e-06 PF02463.9.ls 1/1 71 1099 .. 1 243 [] 10.4 1.7e-12 Alignments of top-scoring domains: PF02463.9.fs: domain 1 of 2, from 71 to 119: score 21.4, E = 6.2e-06 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV + ri e+F Y + ++ +p++++IvG+NG GKS+i+ AI + KIAA0594 71 SIVRISMENFLTY--DICEVSPGPHLNMIVGANGTGKSSIVCAI--C 113 RF xxxxxxx LGersak<-* LG+ ++k KIAA0594 114 LGL-AGK 119 PF02463.9.ls: domain 1 of 1, from 71 to 1099: score 10.4, E = 1.7e-12 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV + ri e+F Y + ++ +p++++IvG+NG GKS+i+ AI + KIAA0594 71 SIVRISMENFLTY--DICEVSPGPHLNMIVGANGTGKSSIVCAI--C 113 RF xxxx xxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxx LGer..sakkL.RaeklsdLIhaGsksgasvnsAeVti.tFlvqkivdne LG++++ a ++Ra+k + G ++++V+i+ F + KIAA0594 114 LGLAgkPA-FMgRADKVGFFVKRGC------SRGMVEIeLF------RAS 150 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dkkhiNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseL ++ ++ItR + + ++q S +IN k+ t+ k v e KIAA0594 151 GN---------------LVITREIDVAKNQ-SFWFINKKSTTQ-KIVEEK 183 RF xxxxxxxxx LesaGIske......................................... + ++I ++ + + +++ + ++ + ++++ ++ + + + KIAA0594 184 VAALNIQVGnlcqflpqdkvgefaklskielleateksigppemhkyhce 233 RF .................................................. ++++++++++++ +++ + +++ +++++ +++ ++ ++++ +++ + KIAA0594 234 lknlrekekqletsckekteylqkmvqrnerykqdverfyerkrhldlie 283 RF .................................................. ++ ++ + ++ +++ ++ ++ +++ +++ +++++ + + ++ + KIAA0594 284 mleakrpwveyenvrqeyeevklvrdrvkeevrklkegqipitcrieeme 333 RF .................................................. +++ +++ + +++ + ++ ++ +++++ +++++ +++++ + +++ KIAA0594 334 nerhnlearikekatdikeasqkckqkqdvierkdkhieelqqalivkqn 383 RF .................................................. ++++++++ + ++ ++++++++ ++ ++++ + + +++++ ++++ KIAA0594 384 eeldrqrrigntrkmiedlqnelkttencenlqpqidaitndlrriqdek 433 RF .................................................. + + + +++++++ ++++++ ++ + +++ ++++++++++ ++ KIAA0594 434 alcegeiidkrreretlekekksvddhivrfdnlmnqkedklrqrfrdty 483 RF .................................................. + + +++++++ +++ + + + +++++ + ++ ++++ KIAA0594 484 davlwlrnnrdkfkqrvcepimltinmkdnknakyienhipsndlrafvf 533 RF .................................................. + +++ + +++ +++++++ + + ++ + ++++++ KIAA0594 534 esqedmevflkevrdnkklrvnaviapkssyadkapsrslnelkqygffs 583 RF .................................................. ++++ + + + + + ++ +++ ++ ++ ++++ KIAA0594 584 ylrelfdapdpvmsylccqyhihevpvgtektrerierviqetrlkqiyt 633 RF .................................................. +++ + ++ + ++ + + ++++++ +++++++ + KIAA0594 634 aeekyvvktsfysnkvissntslkvaqfltvtvdleqrrhleeqlkeihr 683 RF .................................................. +++ + + +++ + ++ ++++++++++++++++ ++++++++ + KIAA0594 684 klqavdsglialretskhlehkdnelrqkkkellerktkkrqleqkissk 733 RF .................................................. + +++ +++ ++++++++ + ++ + ++ ++ ++ ++ + + KIAA0594 734 lgslklmeqdtcnleeeerkastkikeinvqkaklvteltnlikictslh 783 RF .................................................. ++ ++ +++ ++++++ + ++++ ++ +++++++++++ KIAA0594 784 iqkvdlilqnttviseknklesdymaassqlrlteqhfieldenrqrllq 833 RF .................................................. + +++ ++ ++ ++ ++ + ++ + + + + + +++ + KIAA0594 834 kckelmkrarqvcnlgaeqtlpqeyqtqvptipnghnsslpmvfqdlpnt 883 RF .................................................. +++ + ++ +++ + ++ ++ +++++ +++ ++++ ++ ++ KIAA0594 884 ldeidallteersrascftglnptivqeytkreeeieqlteelkgkkvel 933 RF .................................................. ++ +++ + +++ ++ ++++ ++ +++ + + + ++ ++++ KIAA0594 934 dqyrenisqvkerwlnplkelvekinekfsnffssmqcagevdlhtenee 983 RF xxxxxxxxxxxxxxxxxxxxxxxxx .........................nLSGGEKtLaALALlFAQGEyliqk + ++ + + + + ++ ++ SGGE++++ + l+A +q+ KIAA0594 984 dydkygirirvkfrsstqlheltphHQSGGERSVSTMLYLMA-----LQE 1028 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx xxxxxxx xxx ykPaPFYvlDEiDAALDeaNvsrvAnyikt.elskn.aQFIVIs...lRe ++ PF v DEi D+ N +rv +++ + +n++Q++ I+++ l++ KIAA0594 1029 LNRCPFRVVDEINQGMDPINERRVFEMVVNtACKENtSQYFFITpklLQN 1078 RF xxxxxxxxxxxxxxxxxxxxx .emfekAdrlvGvymvengvst<-* + ek+ +l+ vy ++ KIAA0594 1079 lPYSEKMTVLF-VYNGPHMLEP 1099 //