hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07304352/chunk_1/iprscan-20080502-07304352.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0593 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06333.3.ls TRAP240 1543.5 0 1 PF06333.3.fs TRAP240 1541.6 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06333.3.fs 1/1 1096 1700 .. 1 680 [] 1541.6 0 PF06333.3.ls 1/1 1096 1700 .. 1 680 [] 1543.5 0 Alignments of top-scoring domains: PF06333.3.fs: domain 1 of 1, from 1096 to 1700: score 1541.6, E = 0 *->PmdNvdDvSmlsSqDivRmLlslQPvLQDAiqKKrtggtwsKDASis +++N+ vSm++SqDi+RmLlslQPvLQDAiqKKrt+++w+ KIAA0593 1096 SKRND--VSMQCSQDILRMLLSLQPVLQDAIQKKRTVRPWG------ 1134 ttVsGPLTWqQFHklAGRasYgtnLINQNYEspEPLPIPtilVGYdkDwL V+GPLTWqQFHk+AGR+sYgt+ EspEPLPIPt+l+GYd+D+L KIAA0593 1135 --VQGPLTWQQFHKMAGRGSYGTD------ESPEPLPIPTFLLGYDYDYL 1176 evsPfsipfWdkllLEPYspkRDvaYvVlCPdNEAllngaksFFRDLSai ++sPf++p+W++l+LEPY+++RD+aYvVlCP+NEAllngaksFFRDL+ai KIAA0593 1177 VLSPFALPYWERLMLEPYGSQRDIAYVVLCPENEALLNGAKSFFRDLTAI 1226 YEmCrLGqHkPiqklLrDGilqVGqaaaakladslvtewfsQlqsgqenq YE+CrLGqH+P+++lL+DGi++VG++a++kl+++lv+ewfsQ+++g +n+ KIAA0593 1227 YESCRLGQHRPVSRLLTDGIMRVGSTASKKLSEKLVAEWFSQAADG-NNE 1275 alaeqlkrYAqacrhqLAPYLAalqlDSSLLypPdLvaPtsqsYytPPaa a++ +lk+YAq+cr++L+PYLA+l+lDSSLL++P+LvaPtsqs++tPP++ KIAA0593 1276 AFS-KLKLYAQVCRYDLGPYLASLPLDSSLLSQPNLVAPTSQSLITPPQM 1324 agsgaantefgplassnSslltvtsGvaisttviqaGsyLkelStssSen +++g+ant++++las++Ss++tvtsGvaist+v++a+s+L+++StssS++ KIAA0593 1325 TNTGNANTPSATLASAASSTMTVTSGVAISTSVATANSTLTTASTSSSSS 1374 nclvLYIVNPFSglSgisLPnqnqnqnqNSnsapstspQvqtvsssGFsn ++l+ Sg+S+++LP++++++++NSn+a+s+s+Q++tv+ s+ KIAA0593 1375 SNLN-------SGVSSNKLPSFPPFGSMNSNAAGSMSTQANTVQ----SG 1413 kikGQtqtnedisairtsGviGkssCFQTIVRDttpgQSlSITIQtkPDv +++GQ+ +sa++t+G++G+ss ++p+ Q++PDv KIAA0593 1414 QLGGQQ-----TSALQTAGISGESS--------SLPT-------QPHPDV 1443 iEsillrDklGIPtsgesaeSvinKCRRISTISPpAiViYmNNvnPFtye +Es+++rDk+GIPt+g+s++ v++ PpAiV+Y+ ++PFtye KIAA0593 1444 SESTMDRDKVGIPTDGDSHA-VTY---------PPAIVVYI--IDPFTYE 1481 nanessnssslWllaLlRCyaEmLkiLPdhvrSsvsiqIipcqsvlqstk n++es+nsss+W+l+LlRC++Em+++LP+h++S+vs+qIipcq++lq++k KIAA0593 1482 NTDESTNSSSVWTLGLLRCFLEMVQTLPPHIKSTVSVQIIPCQYLLQPVK 1531 tenrktysQelkSLAfsiFsQCRRpLptsqqvKsLTGFGpaatmEttLkv +e+r++y+Q+lkSLAfs+F+QCRRpLpts++vK+LTGFGp+++mEt+L++ KIAA0593 1532 HEDREIYPQHLKSLAFSAFTQCRRPLPTSTNVKTLTGFGPGLAMETALRS 1581 pdrPslrpikLYtpPFiLAPvkdkQtelDFSRSAGetfGeaeQkYnVlfv pdrP+ +i+LY+pPFiLAPvkdkQtel GetfGea+QkYnVlfv KIAA0593 1582 PDRPE--CIRLYAPPFILAPVKDKQTEL------GETFGEAGQKYNVLFV 1623 gYCLShDqrWlLAtctDerGELLEtcvINIavPNRARRsKisARyiWKDg gYCLShDqrW+LA+ctD++GELLEtc+INI+vPNRARR+K+sAR++ g KIAA0593 1624 GYCLSHDQRWILASCTDLYGELLETCIINIDVPNRARRKKSSARKF---G 1670 LqKLWefLTEiiGlvslsSqPWRVVIGRlGRIG<-* LqKLWe+ ++Glv++sS+PWRVVIGRlGRIG KIAA0593 1671 LQKLWEW---CLGLVQMSSLPWRVVIGRLGRIG 1700 PF06333.3.ls: domain 1 of 1, from 1096 to 1700: score 1543.5, E = 0 *->PmdNvdDvSmlsSqDivRmLlslQPvLQDAiqKKrtggtwsKDASis +++N+ vSm++SqDi+RmLlslQPvLQDAiqKKrt+++w+ KIAA0593 1096 SKRND--VSMQCSQDILRMLLSLQPVLQDAIQKKRTVRPWG------ 1134 ttVsGPLTWqQFHklAGRasYgtnLINQNYEspEPLPIPtilVGYdkDwL V+GPLTWqQFHk+AGR+sYgt+ EspEPLPIPt+l+GYd+D+L KIAA0593 1135 --VQGPLTWQQFHKMAGRGSYGTD------ESPEPLPIPTFLLGYDYDYL 1176 evsPfsipfWdkllLEPYspkRDvaYvVlCPdNEAllngaksFFRDLSai ++sPf++p+W++l+LEPY+++RD+aYvVlCP+NEAllngaksFFRDL+ai KIAA0593 1177 VLSPFALPYWERLMLEPYGSQRDIAYVVLCPENEALLNGAKSFFRDLTAI 1226 YEmCrLGqHkPiqklLrDGilqVGqaaaakladslvtewfsQlqsgqenq YE+CrLGqH+P+++lL+DGi++VG++a++kl+++lv+ewfsQ+++g +n+ KIAA0593 1227 YESCRLGQHRPVSRLLTDGIMRVGSTASKKLSEKLVAEWFSQAADG-NNE 1275 alaeqlkrYAqacrhqLAPYLAalqlDSSLLypPdLvaPtsqsYytPPaa a++ +lk+YAq+cr++L+PYLA+l+lDSSLL++P+LvaPtsqs++tPP++ KIAA0593 1276 AFS-KLKLYAQVCRYDLGPYLASLPLDSSLLSQPNLVAPTSQSLITPPQM 1324 agsgaantefgplassnSslltvtsGvaisttviqaGsyLkelStssSen +++g+ant++++las++Ss++tvtsGvaist+v++a+s+L+++StssS++ KIAA0593 1325 TNTGNANTPSATLASAASSTMTVTSGVAISTSVATANSTLTTASTSSSSS 1374 nclvLYIVNPFSglSgisLPnqnqnqnqNSnsapstspQvqtvsssGFsn ++l+ Sg+S+++LP++++++++NSn+a+s+s+Q++tv+ s+ KIAA0593 1375 SNLN-------SGVSSNKLPSFPPFGSMNSNAAGSMSTQANTVQ----SG 1413 kikGQtqtnedisairtsGviGkssCFQTIVRDttpgQSlSITIQtkPDv +++GQ+ +sa++t+G++G+ss ++p+ Q++PDv KIAA0593 1414 QLGGQQ-----TSALQTAGISGESS--------SLPT-------QPHPDV 1443 iEsillrDklGIPtsgesaeSvinKCRRISTISPpAiViYmNNvnPFtye +Es+++rDk+GIPt+g+s++ v++ PpAiV+Y+ ++PFtye KIAA0593 1444 SESTMDRDKVGIPTDGDSHA-VTY---------PPAIVVYI--IDPFTYE 1481 nanessnssslWllaLlRCyaEmLkiLPdhvrSsvsiqIipcqsvlqstk n++es+nsss+W+l+LlRC++Em+++LP+h++S+vs+qIipcq++lq++k KIAA0593 1482 NTDESTNSSSVWTLGLLRCFLEMVQTLPPHIKSTVSVQIIPCQYLLQPVK 1531 tenrktysQelkSLAfsiFsQCRRpLptsqqvKsLTGFGpaatmEttLkv +e+r++y+Q+lkSLAfs+F+QCRRpLpts++vK+LTGFGp+++mEt+L++ KIAA0593 1532 HEDREIYPQHLKSLAFSAFTQCRRPLPTSTNVKTLTGFGPGLAMETALRS 1581 pdrPslrpikLYtpPFiLAPvkdkQtelDFSRSAGetfGeaeQkYnVlfv pdrP+ +i+LY+pPFiLAPvkdkQtel GetfGea+QkYnVlfv KIAA0593 1582 PDRPE--CIRLYAPPFILAPVKDKQTEL------GETFGEAGQKYNVLFV 1623 gYCLShDqrWlLAtctDerGELLEtcvINIavPNRARRsKisARyiWKDg gYCLShDqrW+LA+ctD++GELLEtc+INI+vPNRARR+K+sAR++ g KIAA0593 1624 GYCLSHDQRWILASCTDLYGELLETCIINIDVPNRARRKKSSARKF---G 1670 LqKLWefLTEiiGlvslsSqPWRVVIGRlGRIG<-* LqKLWe+ ++Glv++sS+PWRVVIGRlGRIG KIAA0593 1671 LQKLWEW---CLGLVQMSSLPWRVVIGRLGRIG 1700 //