hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07140031/chunk_1/iprscan-20080502-07140031.nocrc
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Query sequence: KIAA0585
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 177.1    1.8e-48   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00558    1/1     143   307 ..     1   214 []   177.1  1.8e-48

Alignments of top-scoring domains:
SM00558: domain 1 of 1, from 143 to 307: score 177.1, E = 1.8e-48
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      + +++l +++k+P         k++ ++l+++++     e++ +p  
    KIAA0585   143    PKRRKLLEDYKVP---------KFFTDDLFQYAG-----EKRRPPY- 174  

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         +++ mG++   +s+T++HiD+ +++++N l+qg+    KrW+l+
    KIAA0585   175 ------RWFVMGPP---RSGTGIHIDPLGTSAWNALVQGH----KRWCLF 211  

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                   P   +  l k+ +++                + + ++ +tw+++++++ +
    KIAA0585   212 PTSTPRELIKVTRDE---------------GGNQQDEAITWFNVIYPRTQ 246  

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   l+++p      + ++ ++ QkpGe+vf+P Gw+H V+nl+  +ia+++NF
    KIAA0585   247 LPTWP-----PEFKPLEILQKPGETVFVPGGWWHVVLNLD-TTIAITQNF 290  

                   aspewlpmglrlveelr<-*
                   as++++p  ++ + + r   
    KIAA0585   291 ASSTNFPVVWHKTVRGR    307  

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