hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07122394/chunk_1/iprscan-20080502-07122394.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0584 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01755.8.ls Glycosyltransferase family 25 (LPS bi 266.1 6.6e-77 1 PF01755.8.fs Glycosyltransferase family 25 (LPS bi 264.4 2.2e-76 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01755.8.fs 1/1 453 638 .. 1 242 [] 264.4 2.2e-76 PF01755.8.ls 1/1 453 638 .. 1 242 [] 266.1 6.6e-77 Alignments of top-scoring domains: PF01755.8.fs: domain 1 of 1, from 453 to 638: score 264.4, E = 2.2e-76 *->mikiyvISLkrapdRRehIqkefeklfeknllNnipFqFFDAidgke +++i++I+Lkr++dRR+++ ++++++ +i+ +++ A+dgk KIAA0584 453 FDEIFMINLKRRKDRRDRMLRTLYEQ-------EIEVKIVEAVDGKA 492 lneLHPLvkHlhpsfiqikekllqelhllfkllnfllrskyagrpLTlGE ln+ ++l++l++++++++r++y++rpLT GE KIAA0584 493 LNT--------------------SQLKALNIEMLPGYRDPYSSRPLTRGE 522 iGCflSHysLWekcvelnleyiiIlEDDvilsenFkeiLefllkeinkkk iGCflSHys+W+++++++le+ ++ EDDv+++++Fk+ L++l+++i++++ KIAA0584 523 IGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDNIDQAQ 572 eleflrlgewkktrfdendkevvkLetflpdskkykrtkiadygnraddl ++ l+++++k+++ +e++k+v++++++++++++y KIAA0584 573 LDWELIYIGRKRMQVKEPEKAVPNVANLVEADYSY--------------- 607 vhfyllksghaGTaGYlitpkaAkkLLkylknwpsdellpvDelm<-* +T+GY+i++++A+kL + p++++lpvDe++ KIAA0584 608 -----------WTLGYVISLEGAQKLVGAN---PFGKMLPVDEFL 638 PF01755.8.ls: domain 1 of 1, from 453 to 638: score 266.1, E = 6.6e-77 *->mikiyvISLkrapdRRehIqkefeklfeknllNnipFqFFDAidgke +++i++I+Lkr++dRR+++ ++++++ +i+ +++ A+dgk KIAA0584 453 FDEIFMINLKRRKDRRDRMLRTLYEQ-------EIEVKIVEAVDGKA 492 lneLHPLvkHlhpsfiqikekllqelhllfkllnfllrskyagrpLTlGE ln+ ++l++l++++++++r++y++rpLT GE KIAA0584 493 LNT--------------------SQLKALNIEMLPGYRDPYSSRPLTRGE 522 iGCflSHysLWekcvelnleyiiIlEDDvilsenFkeiLefllkeinkkk iGCflSHys+W+++++++le+ ++ EDDv+++++Fk+ L++l+++i++++ KIAA0584 523 IGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDNIDQAQ 572 eleflrlgewkktrfdendkevvkLetflpdskkykrtkiadygnraddl ++ l+++++k+++ +e++k+v++++++++++++y KIAA0584 573 LDWELIYIGRKRMQVKEPEKAVPNVANLVEADYSY--------------- 607 vhfyllksghaGTaGYlitpkaAkkLLkylknwpsdellpvDelm<-* +T+GY+i++++A+kL + p++++lpvDe++ KIAA0584 608 -----------WTLGYVISLEGAQKLVGAN---PFGKMLPVDEFL 638 //