# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh15957.fasta.huge -Q ../query/KIAA0582.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0582, 760 aa vs ./tmplib.23663 library 1986745 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.0883+/-0.00858; mu= -2.0518+/- 0.581 mean_var=312.1083+/-75.392, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.072597 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0311 ( 2324 res) hg00112s1 (2324) 257 41.3 0.0013 >>KIAA0311 ( 2324 res) hg00112s1 (2324 aa) initn: 253 init1: 164 opt: 257 Z-score: 156.8 bits: 41.3 E(): 0.0013 Smith-Waterman score: 275; 22.981% identity (48.607% similar) in 718 aa overlap (98-746:238-902) 70 80 90 100 110 120 KIAA05 TCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQVEKTK :: :::: ::. : . . KIAA03 DSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGL-------GDMTSSQVKTKPFDS 210 220 230 240 250 260 130 140 150 160 KIAA05 LSSSE---EFPQT------LSLPRTTTICSGHDADTE---------DDPSLADLPQALDL : :: :::. :.. . .: .: :: :: . . .: . KIAA03 WSYSEMEKEFPELIRSVGLLTVAADSISTNGSEAVTEEVSQVSLSVDDKGGCEEDNASAV 270 280 290 300 310 320 170 180 190 200 210 220 KIAA05 SQQPHSSGLSCLSQWKSVLSPGSAAQPSSCSISASSTGSS---LQGHQ----ERAEPRGG .:: ::. . .: . .:::::: ... :..:: ...: : : :. KIAA03 EEQP---GLTLGVSSSSGEALTNAAQPSSETVQQESSSSSHHDAKNQQPVPCENATPK-- 330 340 350 360 370 230 240 250 260 270 280 KIAA05 SLAKVSSSLEPVVPQEPSSVVGLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLP . . . : .:. : : . . .:.. .. :.:.. . : KIAA03 RTIRDCFNYNEDSPTQPT----LPKRGLFLKEETFKNDLKGNGGKRQMVDLKPEMSRSTP 380 390 400 410 420 430 290 300 310 320 330 KIAA05 DSLPPSPDRHSPLWNPNKEYEDLLDYTYPLRPGPQ------LPK----HLDSRVPADPVL . . : ::: .. .:. .:: :. : : .:.. : KIAA03 SLVDP-PDR--------SKLCLVLQSSYPNSPSAASQSYECLHKVGNGNLENTVKFHIKE 440 450 460 470 480 340 350 360 370 380 390 KIAA05 QDSGVDLDSFSVSPASTLKSPTNVSPNCPPAEATALPF-SGPREPSLKQWPSRVPQKQGG .:.. . . : ::.: ..: . :: .. :: . . :. : ::. : KIAA03 ISSSLGRLNDCYKEKSRLKKPHKTSEEVPPCRTPKRGTGSGKQAKNTKS--SAVPN--GE 490 500 510 520 530 400 410 420 430 440 KIAA05 MGLAS------WSQLASTPRAPGSRDARWERREP--ALRGAKDRLTIGKHLDMGSPQLRT .. .: .. ::: . :. . . ... .: ... ..:: .. . KIAA03 LSYTSKAIEGPQTNSASTSSLEPCNQRSWNAKLQLQSETSSSPAFTQSSESSVGSDNIMS 540 550 560 570 580 590 450 460 470 480 490 500 KIAA05 RDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDDEYLALPARLTQVSSLVSYLG : : ..: . .: :. . . : ..:::::::..: :. :. : KIAA03 -----PVPLLSKHKSKKGQASSPSHVTRNGEVVEAWYGSDEYLALPSHLKQTEVLALKLE 600 610 620 630 640 650 510 520 530 540 KIAA05 SISTLVTL-PTGD-IKGQSPLEVS----DSDGPASF-------------PSSSSQSQLPP ... :. : :. :.. . :.: ::. .. :::::. KIAA03 NLTKLLPQKPRGETIQNIDDWELSEMNSDSEIYPTYHVKKKHTRLGRVSPSSSSDIASSL 660 670 680 690 700 710 550 560 570 580 590 KIAA05 GAALQGS------GDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPA : ..... .: :.. : : .. . : .: . .: . . :. :. .: KIAA03 GESIESGPLSDILSDEESSMP--LAGMKKYADEKSERASSSEKNESHSA----TKSALIQ 720 730 740 750 760 600 610 620 630 640 650 KIAA05 RLDRWPFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAAR .: . :.. : .. :.. . .. : .:.:.: :: .. ..:.. : . KIAA03 KLMQ------DIQHQ-------DNYEAIWEKIEGFVNKLDEFIQWLNEAMETTENWTPPK 770 780 790 800 810 660 670 680 690 700 710 KIAA05 SNLTSLKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSG ... .:: :. . .:: ..: : .: :.: ..:. ::. . . :.:.: ::.: KIAA03 AEMDDLKLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLRMIASQWK 820 830 840 850 860 870 720 730 740 750 760 KIAA05 ELESHADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV ::. . : .. :: .:: . . : : KIAA03 ELQRQIKRQHSWILRALDTIKAEILATDVSVEDEEGTGSPKAEVQLCYLEAQRDAVEQMS 880 890 900 910 920 930 760 residues in 1 query sequences 1986745 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:57 2008 done: Thu Dec 18 15:07:58 2008 Total Scan time: 0.600 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]