# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh15957.fasta.huge -Q ../query/KIAA0582.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0582, 760 aa
 vs ./tmplib.23663 library

1986745 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.0883+/-0.00858; mu= -2.0518+/- 0.581
 mean_var=312.1083+/-75.392, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.072597

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0311  ( 2324 res)   hg00112s1                  (2324)  257 41.3  0.0013


>>KIAA0311  ( 2324 res)   hg00112s1                       (2324 aa)
 initn: 253 init1: 164 opt: 257  Z-score: 156.8  bits: 41.3 E(): 0.0013
Smith-Waterman score: 275;  22.981% identity (48.607% similar) in 718 aa overlap (98-746:238-902)

        70        80        90       100       110       120       
KIAA05 TCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQVEKTK
                                     ::  ::::       ::.  :  .     .
KIAA03 DSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGL-------GDMTSSQVKTKPFDS
       210       220       230       240              250       260

       130                140       150                160         
KIAA05 LSSSE---EFPQT------LSLPRTTTICSGHDADTE---------DDPSLADLPQALDL
        : ::   :::.       :..   .   .: .: ::         :: .  .  .:  .
KIAA03 WSYSEMEKEFPELIRSVGLLTVAADSISTNGSEAVTEEVSQVSLSVDDKGGCEEDNASAV
              270       280       290       300       310       320

     170       180       190       200          210           220  
KIAA05 SQQPHSSGLSCLSQWKSVLSPGSAAQPSSCSISASSTGSS---LQGHQ----ERAEPRGG
        .::   ::.   . .:  .  .:::::: ...  :..::    ...:    : : :.  
KIAA03 EEQP---GLTLGVSSSSGEALTNAAQPSSETVQQESSSSSHHDAKNQQPVPCENATPK--
                 330       340       350       360       370       

            230       240       250       260       270       280  
KIAA05 SLAKVSSSLEPVVPQEPSSVVGLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLP
          .   . .   : .:.    :  :  .  . .:..   .. :.:..       .   :
KIAA03 RTIRDCFNYNEDSPTQPT----LPKRGLFLKEETFKNDLKGNGGKRQMVDLKPEMSRSTP
         380       390           400       410       420       430 

            290       300       310             320           330  
KIAA05 DSLPPSPDRHSPLWNPNKEYEDLLDYTYPLRPGPQ------LPK----HLDSRVPADPVL
       . . : :::        ..   .:. .::  :.        : :    .:.. :      
KIAA03 SLVDP-PDR--------SKLCLVLQSSYPNSPSAASQSYECLHKVGNGNLENTVKFHIKE
                      440       450       460       470       480  

            340       350       360       370        380       390 
KIAA05 QDSGVDLDSFSVSPASTLKSPTNVSPNCPPAEATALPF-SGPREPSLKQWPSRVPQKQGG
        .:..   .   .  : ::.: ..: . :: ..      :: .  . :.  : ::.  : 
KIAA03 ISSSLGRLNDCYKEKSRLKKPHKTSEEVPPCRTPKRGTGSGKQAKNTKS--SAVPN--GE
            490       500       510       520       530            

                   400       410         420       430       440   
KIAA05 MGLAS------WSQLASTPRAPGSRDARWERREP--ALRGAKDRLTIGKHLDMGSPQLRT
       .. .:       .. :::       .  :. .    .  ...  .: ... ..:: .. .
KIAA03 LSYTSKAIEGPQTNSASTSSLEPCNQRSWNAKLQLQSETSSSPAFTQSSESSVGSDNIMS
      540       550       560       570       580       590        

           450       460       470       480       490       500   
KIAA05 RDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDDEYLALPARLTQVSSLVSYLG
            : :   ..:  . .:  :. .    .  :   ..:::::::..: :.  :.  : 
KIAA03 -----PVPLLSKHKSKKGQASSPSHVTRNGEVVEAWYGSDEYLALPSHLKQTEVLALKLE
           600       610       620       630       640       650   

           510         520           530                    540    
KIAA05 SISTLVTL-PTGD-IKGQSPLEVS----DSDGPASF-------------PSSSSQSQLPP
       ... :.   : :. :.. .  :.:    ::.   ..             :::::.     
KIAA03 NLTKLLPQKPRGETIQNIDDWELSEMNSDSEIYPTYHVKKKHTRLGRVSPSSSSDIASSL
           660       670       680       690       700       710   

          550             560       570       580       590        
KIAA05 GAALQGS------GDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPA
       : .....      .: :.. :  : .. .  :  .: . .: .  . :.    :. .:  
KIAA03 GESIESGPLSDILSDEESSMP--LAGMKKYADEKSERASSSEKNESHSA----TKSALIQ
           720       730         740       750       760           

      600       610       620       630       640       650        
KIAA05 RLDRWPFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAAR
       .: .      :.. :       .. :.. . .. :  .:.:.: :: .. ..:.. :  .
KIAA03 KLMQ------DIQHQ-------DNYEAIWEKIEGFVNKLDEFIQWLNEAMETTENWTPPK
       770                    780       790       800       810    

      660       670       680       690       700       710        
KIAA05 SNLTSLKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSG
       ... .::  :. . .:: ..: : .: :.: ..:. ::. .  .   :.:.:  ::.:  
KIAA03 AEMDDLKLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLRMIASQWK
          820       830       840       850       860       870    

      720       730       740       750       760                  
KIAA05 ELESHADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV                  
       ::. .  : .. :: .:: . .  :  :                                
KIAA03 ELQRQIKRQHSWILRALDTIKAEILATDVSVEDEEGTGSPKAEVQLCYLEAQRDAVEQMS
          880       890       900       910       920       930    




760 residues in 1 query   sequences
1986745 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:57 2008 done: Thu Dec 18 15:07:58 2008
 Total Scan time:  0.600 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]