hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07072623/chunk_1/iprscan-20080502-07072623.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0581
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00148                                                 262.3    3.8e-74   1
SM00149                                                 247.6      1e-69   1
SM00239                                                  61.1    1.4e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00148    1/1     318   469 ..     1   182 []   262.3  3.8e-74
SM00149    1/1     542   658 ..     1   119 []   247.6    1e-69
SM00239    1/1     679   778 ..     1    92 []    61.1  1.4e-13

Alignments of top-scoring domains:
SM00148: domain 1 of 1, from 318 to 469: score 262.3, E = 3.8e-74
                   *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR
                      +Dm++PLshYfInsSHN                              
    KIAA0581   318    EDMSQPLSHYFINSSHN------------------------------ 334  

                   FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdg..ePviyHGhT
                    TYLt  Ql+g ssve+Y+q+L +GcRcvELDcw g+  ++ePvi+HG+T
    KIAA0581   335 -TYLTAGQLAGNSSVEMYRQVLLSGCRCVELDCWKGRTAeeEPVITHGFT 383  

                   ftskikLsdVleaIKkfAFvtSpyPEFvIlSLenHc.spdqQakmaqmfk
                   +t++i++++V+eaI++ AF+tSp+P  + lS+enH++sp qQakma++++
    KIAA0581   384 MTTEISFKEVIEAIAECAFKTSPFP--ILLSFENHVdSPKQQAKMAEYCR 431  

                   eiFgdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-*
                    iFgd L+++Pl+    + g  LPsP +L++KIL+k+K   
    KIAA0581   432 LIFGDALLMEPLEKYPLESGVPLPSPMDLMYKILVKNK    469  

SM00149: domain 1 of 1, from 542 to 658: score 247.6, E = 1e-69
                   *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt
                      +s+Lv+y++pvkF sfe ++++ n + emsSf+Etk    +l+k+p 
    KIAA0581   542    MSNLVNYIQPVKFESFEISKKR-NKSFEMSSFVETK-GLEQLTKSPV 586  

                   dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq
                   +fv+yN+ qLsR+YPkGtRvDSSNY+Pq fWnaGcQMVALNfQT+D+aMq
    KIAA0581   587 EFVEYNKMQLSRIYPKGTRVDSSNYMPQLFWNAGCQMVALNFQTMDLAMQ 636  

                   lNqGmFraNGgCGYVLKPefLR<-*
                   +N+Gm ++NG +GY LKPef+R   
    KIAA0581   637 INMGMYEYNGKSGYRLKPEFMR    658  

SM00239: domain 1 of 1, from 679 to 778: score 61.1, E = 1.4e-13
                   *->tLtvkiisArnLp....DPYVkvs.............kTkvvkktls
                      tL vkiis++ L +++   YV+v   + + +++++  kTk+ +++  
    KIAA0581   679    TLSVKIISGQFLSdkkvGTYVEVDmfglpvdtrrkafKTKTSQGNA- 724  

                   gfNPvWnEesetFeFevpp....s.LeieVyDk..dfiGrvtippnnahq
                     NPvW+Ee   ++F+ +  ++ + L+i Vy+++++fiG+ ++p      
    KIAA0581   725 -VNPVWEEE--PIVFKKVVlptlAcLRIAVYEEggKFIGHRILP------ 765  

                   hsadglihlsell.ggrh.kl<-*
                           ++ +++g+++  l   
    KIAA0581   766 --------VQAIRpGYHYiCL    778  

//