hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07054268/chunk_1/iprscan-20080502-07054268.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0580 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00233 275.1 5.4e-78 5 SM00324 183.6 1.8e-50 1 SM00105 124.5 1.2e-32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/5 410 503 .. 1 82 [] 73.0 3.7e-17 SM00233 2/5 515 608 .. 1 82 [] 53.9 2.1e-11 SM00105 1/1 613 734 .. 1 139 [] 124.5 1.2e-32 SM00233 3/5 820 932 .. 1 82 [] 51.7 9.3e-11 SM00233 4/5 942 1041 .. 1 82 [] 28.5 0.00095 SM00324 1/1 1053 1229 .. 1 193 [] 183.6 1.8e-50 SM00233 5/5 1362 1466 .. 1 82 [] 68.0 1.2e-15 Alignments of top-scoring domains: SM00233: domain 1 of 5, from 410 to 503: score 73.0, E = 3.7e-17 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL +k+GwL k+s+++k+ ++kr++ +++ +++yy ++++ kg+ipL KIAA0580 410 KVKSGWLDKLSpqgKrMFQKRWVKFDGLSISYYNNEkemYSKGIIPL 456 sgc.svre.p..cFeivt.drtlllqAeseeereeWvealqsaiaka<-* s +++vr++ ++ Fe+vt++rt++++ e eeer++W++ l +a++++ KIAA0580 457 SAIsTVRVqGdnKFEVVTtQRTFVFRVEKEEERNDWISILLNALKSQ 503 SM00233: domain 2 of 5, from 515 to 608: score 53.9, E = 2.1e-11 *->vikeGwLlkkskswkkryfvLfngvLlyyksk......kpkgsipLs ++k+G+L ++ k + vL ++++ ++k++++ +++ + +ip++ KIAA0580 515 PEKCGYLELRG-YKAKIFTVLSGNSVWLCKNEqdfksgLGITIIPMN 560 gcsvre.p.....cFeivt.drtlllqAeseeereeWvealqsaiaka<- + v+ ++ + +Fei+t+ r++ + Ae+e+e+++W+ea q+ ia+ KIAA0580 561 VANVKQvDrtvkqSFEIITpYRSFSFTAETEKEKQDWIEAVQQSIAET 608 * KIAA0580 - - SM00105: domain 1 of 1, from 613 to 734: score 124.5, E = 1.2e-32 *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs e a + + ++N+ C+DC+a p+P+WaS+nl v++C +C+G HRs KIAA0580 613 EVAEKIWFN--ESNRSCADCKA-PDPDWASINLCVVICKKCAGQHRS 656 LfGvHiSkVnvRSltLD..tWteeeLrllesckgGNenansfwesnlddf L G+ +SkV RSl++D + W e ++l+ +GN++an+fw +nl ++ KIAA0580 657 L-GPKDSKV--RSLKMDasIWSNELIELFI--VIGNKRANDFWAGNLQKD 701 slkpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-* + ds + +k+++fi +KY+e +f + + a+ KIAA0580 702 EELHMDS----------PVEKRKNFITQKYKEGKF-RKTLLASL 734 SM00233: domain 3 of 5, from 820 to 932: score 51.7, E = 9.3e-11 *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk.. + ++ +L++ + ++ ++ ++ ++ k+++vL +g+L+yy+++++ KIAA0580 820 TFLCDFLYQAPsaasklssekklLeETNKKWCVLEGGFLSYYENDks 866 .kpkgsipLsgcsvre.p............cFeivt.dr.tlllqAesee ++p g+i+++++++ ++++ + ++ Fei+ ++++++l+ Ae+++ KIAA0580 867 tTPNGTININEVICLAiHkedfylntgpifIFEIYLpSErVFLFGAETSQ 916 ereeWvealqsaiaka<-* +++W ea+ ++ ++ KIAA0580 917 AQRKWTEAIAKHFVPL 932 SM00233: domain 4 of 5, from 942 to 1041: score 28.5, E = 0.00095 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk.....kpkgsi + G+L k + +++w+k +f ++ ++L+++ + ++ +++ + KIAA0580 942 YDLIGQLFYKDchaLdQWRKGWFAMDKSSLHFCLQMqevqgDRMHLR 988 pLsgcsvre.p.......cFeivt.drtlllqAeseeereeWvealqsai L++++++ + ++++ +++ +v ++rtl+++ ++ +++ W +a+++a+ KIAA0580 989 RLQELTISTmVqngekldVLLLVEkGRTLYIHGHTKLDFTVWHTAIEKAA 1038 aka<-* KIAA0580 1039 GTD 1041 SM00324: domain 1 of 1, from 1053 to 1229: score 183.6, E = 1.8e-50 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. ++Piiv +Ci+++ ++Gl ++ IY+++G ++ eL+e+f ++ + KIAA0580 1053 NDVPIIVNSCIAFVTQYGLGCKYIYQKNGDPLHISELLESFKKDARs 1099 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie ++ +++ dv+ +LK++L + + Llt+ely+ +i+ KIAA0580 1100 F-----------KLRAGKHQLEDVTAVLKSFLSDIDDALLTKELYPYWIS 1138 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a +d+ er++++ ++++LP +nratL ++++HL KIAA0580 1139 ALDT--------------QDDKERIKKYGAFIRSLPGVNRATLAAIIeHL 1174 nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl +rV+++se N+M+a+NLA+vF+ +L++ +++++++ + +++n++ve++ KIAA0580 1175 YRVQKCSEINHMNAHNLALVFSSCLFQTKgqtseevNVIEDLINNYVEIF 1224 ienad<-* +++d KIAA0580 1225 EVKED 1229 SM00233: domain 5 of 5, from 1362 to 1466: score 68.0, E = 1.2e-15 *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk...kpkg ikeG L++k+ +++ +++++++ryfvL++g+L++yk+ +++k+ + KIAA0580 1362 SIKEGILKIKEepskilsGnKFQDRYFVLRDGFLFLYKDVkssKHDK 1408 sipLsgcsvre.p........cFeivt.dr..tlllqAeseeereeWvea +++Ls+++++++++++ +++ ++ ++ ++++ ++l+++s+++++eW+++ KIAA0580 1409 MFSLSSMKFYRgVkkkmkpptSWGLTAySEkhHWHLCCDSSQTQTEWMTS 1458 lqsaiaka<-* + a++++ KIAA0580 1459 IFIAQHEY 1466 //