hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07054268/chunk_1/iprscan-20080502-07054268.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0580 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00169.19.fs PH domain 214.4 8.8e-65 5 PF00169.19.ls PH domain 224.3 2.4e-64 5 PF00620.17.fs RhoGAP domain 185.2 2.3e-54 1 PF00620.17.ls RhoGAP domain 187.2 3.8e-53 1 PF01412.9.fs Putative GTPase activating protein for Arf 123.2 4e-35 1 PF01412.9.ls Putative GTPase activating protein for Arf 122.5 1.1e-33 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 27.6 1.3e-06 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 29.5 1.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/5 410 501 .. 1 92 [] 60.2 7.1e-18 PF00169.19.ls 1/5 410 501 .. 1 92 [] 62.2 1.5e-15 PF00169.19.ls 2/5 515 606 .. 1 92 [] 40.1 6.8e-09 PF00169.19.fs 2/5 515 606 .. 1 92 [] 38.2 3.7e-11 PF01412.9.ls 1/1 612 734 .. 1 137 [] 122.5 1.1e-33 PF01412.9.fs 1/1 622 726 .. 12 129 .. 123.2 4e-35 PF00169.19.ls 3/5 820 930 .. 1 92 [] 38.3 2.4e-08 PF00169.19.fs 3/5 820 930 .. 1 92 [] 36.3 1.3e-10 PF00620.17.fs 1/1 1056 1209 .. 1 155 [] 185.2 2.3e-54 PF00620.17.ls 1/1 1056 1209 .. 1 155 [] 187.2 3.8e-53 PF00788.13.ls 1/1 1253 1347 .. 1 97 [] 29.5 1.1e-05 PF00788.13.fs 1/1 1253 1347 .. 1 97 [] 27.6 1.3e-06 PF00169.19.fs 5/5 1362 1464 .. 1 92 [] 64.0 5.1e-19 PF00169.19.ls 5/5 1362 1464 .. 1 92 [] 66.0 1.1e-16 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 5, from 410 to 501: score 60.2, E = 7.1e-18 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL +k+GwL k +++gk+ ++kR++ + + +++yy ++k+ kg+ipL KIAA0580 410 KVKSGWLDKLSpqGKRMFQKRWVKFDGLSISYYNNEKeMYSKGIIPL 456 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< s i+ ++v +n Fe++t++r t++++ e eeer++W++ + +a++ KIAA0580 457 SAISTVRVQG---DNKFEVVTtQR-TFVFRVEKEEERNDWISILLNALK 501 -* KIAA0580 - - PF00169.19.ls: domain 1 of 5, from 410 to 501: score 62.2, E = 1.5e-15 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL +k+GwL k +++gk+ ++kR++ + + +++yy ++k+ kg+ipL KIAA0580 410 KVKSGWLDKLSpqGKRMFQKRWVKFDGLSISYYNNEKeMYSKGIIPL 456 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< s i+ ++v +n Fe++t++r t++++ e eeer++W++ + +a++ KIAA0580 457 SAISTVRVQG---DNKFEVVTtQR-TFVFRVEKEEERNDWISILLNALK 501 -* KIAA0580 - - PF00169.19.ls: domain 2 of 5, from 515 to 606: score 40.1, E = 6.8e-09 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk....kkpkgsip ++k+G+L ++g k + vL++++ +++k++++ ++ +ip KIAA0580 515 PEKCGYLELRG---YKAKIFTVLSGNSVWLCKNEQdfksGLGITIIP 558 LsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair ++ ++v+ v++ k +Fei+t+ r ++ + ae+e+e+++W++a q++i+ KIAA0580 559 MNVANVKQVDRT-VKQSFEIITpYR-SFSFTAETEKEKQDWIEAVQQSIA 606 <-* KIAA0580 - - PF00169.19.fs: domain 2 of 5, from 515 to 606: score 38.2, E = 3.7e-11 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk....kkpkgsip ++k+G+L ++g k + vL++++ +++k++++ ++ +ip KIAA0580 515 PEKCGYLELRG---YKAKIFTVLSGNSVWLCKNEQdfksGLGITIIP 558 LsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair ++ ++v+ v++ k +Fei+t+ r ++ + ae+e+e+++W++a q++i+ KIAA0580 559 MNVANVKQVDRT-VKQSFEIITpYR-SFSFTAETEKEKQDWIEAVQQSIA 606 <-* KIAA0580 - - PF01412.9.ls: domain 1 of 1, from 612 to 734: score 122.5, E = 1.1e-33 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v +++ ++ +N+ C+DC+a p+P+WaS+nl v++C +C+G HR+ KIAA0580 612 YEVAEKIWFNE-SNRSCADCKA-PDPDWASINLCVVICKKCAGQHRS 656 LfGvHiSkVnvRSltLD..sWtpeelrklesckgGNenansfwEsnlddf L G+ +SkV RSl++D + W e ++++ ++GN++an fw +nl + KIAA0580 657 L-GPKDSKV--RSLKMDasIWSNELIELFI--VIGNKRANDFWAGNLQKD 701 slkpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* + ds + +k+++fi +KY+e +f + + + KIAA0580 702 EELHMDS---------PVEKRKNFITQKYKEGKFRKTLLASL 734 PF01412.9.fs: domain 1 of 1, from 622 to 726: score 123.2, E = 4e-35 *->pgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRnLfGvHiSkVnv ++N+ C+DC+a p+P+WaS+nl v++C +C+G HR+L G+ +SkV KIAA0580 622 ESNRSCADCKA-PDPDWASINLCVVICKKCAGQHRSL-GPKDSKV-- 664 RSltLD..sWtpeelrklesckgGNenansfwEsnlddfslkpkdsdaaa RSl++D + W e ++++ ++GN++an fw +nl + + ds KIAA0580 665 RSLKMDasIWSNELIELFI--VIGNKRANDFWAGNLQKDEELHMDS---- 708 vKCqddrqkyesfiaaKYeeklf<-* + +k+++fi +KY+e +f KIAA0580 709 -----PVEKRKNFITQKYKEGKF 726 PF00169.19.ls: domain 3 of 5, from 820 to 930: score 38.3, E = 2.4e-08 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. + + +L++ + ++ +++++ +++ k ++vL ++ L+yy+++k+ KIAA0580 820 TFLCDFLYQAPsaasklssekkLLEETNKKWCVLEGGFLSYYENDKs 866 kkpkgsipLsgiqvtkvpdn......krkncFeirt.dretlllqaesee +p g+i+++++ + + + + +++ ++Fei ++++++l+ ae+++ KIAA0580 867 TTPNGTININEVICLAIHKEdfylntGPIFIFEIYLpSERVFLFGAETSQ 916 erkeWvkaiqsair<-* ++W +ai ++ KIAA0580 917 AQRKWTEAIAKHFV 930 PF00169.19.fs: domain 3 of 5, from 820 to 930: score 36.3, E = 1.3e-10 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. + + +L++ + ++ +++++ +++ k ++vL ++ L+yy+++k+ KIAA0580 820 TFLCDFLYQAPsaasklssekkLLEETNKKWCVLEGGFLSYYENDKs 866 kkpkgsipLsgiqvtkvpdn......krkncFeirt.dretlllqaesee +p g+i+++++ + + + + +++ ++Fei ++++++l+ ae+++ KIAA0580 867 TTPNGTININEVICLAIHKEdfylntGPIFIFEIYLpSERVFLFGAETSQ 916 erkeWvkaiqsair<-* ++W +ai ++ KIAA0580 917 AQRKWTEAIAKHFV 930 PF00620.17.fs: domain 1 of 1, from 1056 to 1209: score 185.2, E = 2.3e-54 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+iv +Ci+f+ ++GL ++ Iy+++G+ +i eL e f ++++ ++ KIAA0580 1056 PIIVNSCIAFVTQYGLGCKYIYQKNGDPLHISELLESFKKDARSFKL 1102 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea + + +v+ +LK FL ++ + Llt+ely+ +i a++++d+ er+++ KIAA0580 1103 RAGKHQLEDVTAVLKSFLSDIDDALLTKELYPYWIS-ALDTQDDKERIKK 1151 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr + + +r+LP +Nr+tL+++++hL+rV+++se+N+M+ahNLA+vF+ +L++ KIAA0580 1152 YGAFIRSLPGVNRATLAAIIEHLYRVQKCSEINHMNAHNLALVFSSCLFQ 1201 ppdgdsad<-* ++ +s + KIAA0580 1202 TKGQTSEE 1209 PF00620.17.ls: domain 1 of 1, from 1056 to 1209: score 187.2, E = 3.8e-53 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+iv +Ci+f+ ++GL ++ Iy+++G+ +i eL e f ++++ ++ KIAA0580 1056 PIIVNSCIAFVTQYGLGCKYIYQKNGDPLHISELLESFKKDARSFKL 1102 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea + + +v+ +LK FL ++ + Llt+ely+ +i a++++d+ er+++ KIAA0580 1103 RAGKHQLEDVTAVLKSFLSDIDDALLTKELYPYWIS-ALDTQDDKERIKK 1151 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr + + +r+LP +Nr+tL+++++hL+rV+++se+N+M+ahNLA+vF+ +L++ KIAA0580 1152 YGAFIRSLPGVNRATLAAIIEHLYRVQKCSEINHMNAHNLALVFSSCLFQ 1201 ppdgdsad<-* ++ +s + KIAA0580 1202 TKGQTSEE 1209 PF00788.13.ls: domain 1 of 1, from 1253 to 1347: score 29.5, E = 1.1e-05 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++ + Vy e p+++ i++s+ + aee+ + +L ++ ++ + KIAA0580 1253 GDLLIEVYVERKEPDCSIIIRISPVMEAEELTNDILAIKNIIPTKGD 1299 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq..rsrFlLrrr ++ +E v+e ++ er +L+ E++l+ +l++++ a++++ ++++r KIAA0580 1300 IWATFE---VIENEELER-PLHYKENVLEQVLRWSSLAEpgSAYLVVKRF 1345 ed<-* KIAA0580 1346 LT 1347 PF00788.13.fs: domain 1 of 1, from 1253 to 1347: score 27.6, E = 1.3e-06 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++ + Vy e p+++ i++s+ + aee+ + +L ++ ++ + KIAA0580 1253 GDLLIEVYVERKEPDCSIIIRISPVMEAEELTNDILAIKNIIPTKGD 1299 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq..rsrFlLrrr ++ +E v+e ++ er +L+ E++l+ +l++++ a++++ ++++r KIAA0580 1300 IWATFE---VIENEELER-PLHYKENVLEQVLRWSSLAEpgSAYLVVKRF 1345 ed<-* KIAA0580 1346 LT 1347 PF00169.19.fs: domain 5 of 5, from 1362 to 1464: score 64.0, E = 5.1e-19 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk.kkpkg ikeG L+ k+++++ ++ ++++RyfvL+d+ L++ykd k++k+ + KIAA0580 1362 SIKEGILKIKEepskilSGNKFQDRYFVLRDGFLFLYKDVKsSKHDK 1408 sipLsgiqvtkvpdn..krkncFeirt.dr.etlllqaeseeerkeWvka +++Ls++++++ ++ + k + ++ ++ +++ +++l+++s++ +eW+++ KIAA0580 1409 MFSLSSMKFYRGVKKkmKPPTSWGLTAySEkHHWHLCCDSSQTQTEWMTS 1458 iqsair<-* i a++ KIAA0580 1459 IFIAQH 1464 PF00169.19.ls: domain 5 of 5, from 1362 to 1464: score 66.0, E = 1.1e-16 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk.kkpkg ikeG L+ k+++++ ++ ++++RyfvL+d+ L++ykd k++k+ + KIAA0580 1362 SIKEGILKIKEepskilSGNKFQDRYFVLRDGFLFLYKDVKsSKHDK 1408 sipLsgiqvtkvpdn..krkncFeirt.dr.etlllqaeseeerkeWvka +++Ls++++++ ++ + k + ++ ++ +++ +++l+++s++ +eW+++ KIAA0580 1409 MFSLSSMKFYRGVKKkmKPPTSWGLTAySEkHHWHLCCDSSQTQTEWMTS 1458 iqsair<-* i a++ KIAA0580 1459 IFIAQH 1464 //