hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07004498/chunk_1/iprscan-20080502-07004498.nocrc
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Query sequence: KIAA0577
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 125.6    5.4e-33   1
SM00490                                                  67.3    1.9e-15   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     399   584 ..     1   219 []   125.6  5.4e-33
SM00490      1/1     635   732 ..     1    86 []    67.3  1.9e-15

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 399 to 584: score 125.6, E = 5.4e-33
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         + +p  +e + ++ +++++i+ ++TGsGKT++++++l+e ++ +
    KIAA0577   399    RSlPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTN 445  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                           kg ++ +++P+r++a+ +a ++++++          ++++g 
    KIAA0577   446 --------KGMKIACTQPRRVAAMSVAARVAREM----------GVKLGN 477  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     G s+     ++++++s++t + ++T g+Ll+++ +++  +l  +++v+
    KIAA0577   478 EVGySI-----RFEDCTSERTVLRYMTDGMLLREFlSEP--DLaSYSVVM 520  

                   lDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppeien
                   +DEaH++          ++d+l +l+k + + ++ +++l+ SAT+ +  +
    KIAA0577   521 VDEAHERT--------LHTDILFgLIKDVarfRPELKVLVASATM-DTAR 561  

                   llklflnlpelfpnpvfisvgftlepieqf<-*
                   ++  f        +pvf ++g+  +p+++f   
    KIAA0577   562 FSTFFDD------APVFRIPGR-RFPVDIF    584  

SM00490: domain 1 of 1, from 635 to 732: score 67.3, E = 1.9e-15
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      ++l  +++ell      v++++++l+++++ +i++  + g +kv+va
    KIAA0577   635    RRLGSKIRELL------VLPIYANLPSDMQARIFQPTPPGARKVVVA 675  

                   TdvaerGlDipgvdlVInydl..................pwspasyiQRi
                   T++ae++l+i g+ +V + ++ ++++ +++++ ++ + +p s+as+ QR+
    KIAA0577   676 TNIAETSLTIEGIIYVLDPGFckqksynprtgmesltvtPCSKASANQRA 725  

                   GRaGRaG<-*
                   GRaGR     
    KIAA0577   726 GRAGRVA    732  

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