hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07004498/chunk_1/iprscan-20080502-07004498.nocrc
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Query sequence: KIAA0577
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF07717.6.fs Domain of unknown function (DUF1605)         119.0    1.2e-33   1
PF07717.6.ls Domain of unknown function (DUF1605)         120.7    3.9e-33   1
PF04408.13.ls Helicase associated domain (HA2)              90.6    4.5e-24   1
PF04408.13.fs Helicase associated domain (HA2)              88.9    1.5e-23   1
PF00271.21.fs Helicase conserved C-terminal domain          48.9    1.1e-13   1
PF00271.21.ls Helicase conserved C-terminal domain          50.9    3.9e-12   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00271.21.fs   1/1     638   732 ..     1    76 []    48.9  1.1e-13
PF00271.21.ls   1/1     638   732 ..     1    76 []    50.9  3.9e-12
PF04408.13.ls   1/1     793   884 ..     1   124 []    90.6  4.5e-24
PF04408.13.fs   1/1     793   884 ..     1   124 []    88.9  1.5e-23
PF07717.6.fs   1/1     918  1017 ..     1   139 []   119.0  1.2e-33
PF07717.6.ls   1/1     918  1017 ..     1   139 []   120.7  3.9e-33

Alignments of top-scoring domains:
PF00271.21.fs: domain 1 of 1, from 638 to 732: score 48.9, E = 1.1e-13
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                        + +++ v++++++l+++ + +i++    g +kv+vaT++a+++++
    KIAA0577   638    GSkIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLT 684  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   i ++ +V + ++ ++++ +++++ ++ + +p + +s  QR+GRaGR+   
    KIAA0577   685 IEGIIYVLDPGFckqksynprtgmesltvtPCSKASANQRAGRAGRVA   732  

                   *
                    
    KIAA0577     -   -    

PF00271.21.ls: domain 1 of 1, from 638 to 732: score 50.9, E = 3.9e-12
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                        + +++ v++++++l+++ + +i++    g +kv+vaT++a+++++
    KIAA0577   638    GSkIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLT 684  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   i ++ +V + ++ ++++ +++++ ++ + +p + +s  QR+GRaGR+   
    KIAA0577   685 IEGIIYVLDPGFckqksynprtgmesltvtPCSKASANQRAGRAGRVA   732  

                   *
                    
    KIAA0577     -   -    

PF04408.13.ls: domain 1 of 1, from 793 to 884: score 90.6, E = 4.5e-24
                   *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf
                       Ale Ly+LgAl ++ geLT   Gr+ma+lP+dP L+km+ l++ ++
    KIAA0577   793    LALEQLYALGAL-NHLGELT-TSGRKMAELPVDPMLSKMI-LASEKY 836  

                   gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla
                    c++e+l++aa+Lsv +++f++          p+dk   a+      +++
    KIAA0577   837 SCSEEILTVAAMLSVNNSIFYR----------PKDKVVHAD------NAR 870  

                   rakfegrsllksarsrlts.lsDhlall<-*
                    + f               + +Dhl+ll   
    KIAA0577   871 VNFF--------------LpGGDHLVLL    884  

PF04408.13.fs: domain 1 of 1, from 793 to 884: score 88.9, E = 1.5e-23
                   *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf
                       Ale Ly+LgAl ++ geLT   Gr+ma+lP+dP L+km+ l++ ++
    KIAA0577   793    LALEQLYALGAL-NHLGELT-TSGRKMAELPVDPMLSKMI-LASEKY 836  

                   gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla
                    c++e+l++aa+Lsv +++f++          p+dk   a+      +++
    KIAA0577   837 SCSEEILTVAAMLSVNNSIFYR----------PKDKVVHAD------NAR 870  

                   rakfegrsllksarsrlts.lsDhlall<-*
                    + f               + +Dhl+ll   
    KIAA0577   871 VNFF--------------LpGGDHLVLL    884  

PF07717.6.fs: domain 1 of 1, from 918 to 1017: score 119.0, E = 1.2e-33
                   *->sQLlrilkrlglilnessgdiellrkallaGlypnvArreedrggkg
                       QL+++l+r ++ l+++ gd+  +rka++aG++++ Ar+++      
    KIAA0577   918    EQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRS----- 959  

                   sYktlr.svrlpvrskrsgvkdgeekgkfktndgnVfiHPsSvLfntkkk
                    Y+t++++++                         VfiHP+S+Lf   ++
    KIAA0577   960 GYRTVKqQQT-------------------------VFIHPNSSLF---EQ 981  

                   ppkwivytelvetskkgdgskvyardvtaispewllllapgki<-*
                   +p+w++y+elv t+k      +++r+v +i++ wll++ap ++   
    KIAA0577   982 QPRWLLYHELVLTTK------EFMRQVLEIESSWLLEVAP-HY    1017 

PF07717.6.ls: domain 1 of 1, from 918 to 1017: score 120.7, E = 3.9e-33
                   *->sQLlrilkrlglilnessgdiellrkallaGlypnvArreedrggkg
                       QL+++l+r ++ l+++ gd+  +rka++aG++++ Ar+++      
    KIAA0577   918    EQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRS----- 959  

                   sYktlr.svrlpvrskrsgvkdgeekgkfktndgnVfiHPsSvLfntkkk
                    Y+t++++++                         VfiHP+S+Lf   ++
    KIAA0577   960 GYRTVKqQQT-------------------------VFIHPNSSLF---EQ 981  

                   ppkwivytelvetskkgdgskvyardvtaispewllllapgki<-*
                   +p+w++y+elv t+k      +++r+v +i++ wll++ap ++   
    KIAA0577   982 QPRWLLYHELVLTTK------EFMRQVLEIESSWLLEVAP-HY    1017 

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