# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj00186.fasta.huge -Q ../query/KIAA0573.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0573, 451 aa vs ./tmplib.23663 library 1987054 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.2370+/-0.00538; mu= 13.3179+/- 0.366 mean_var=111.0969+/-27.111, 0's: 0 Z-trim: 1 B-trim: 35 in 2/38 Lambda= 0.121681 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1830 ( 486 res) hj01608 ( 486) 178 41.8 0.00012 >>KIAA1830 ( 486 res) hj01608 (486 aa) initn: 137 init1: 97 opt: 178 Z-score: 175.5 bits: 41.8 E(): 0.00012 Smith-Waterman score: 200; 21.244% identity (54.404% similar) in 386 aa overlap (34-399:3-374) 10 20 30 40 50 KIAA05 GAAAWRILRCRRLPEPSPFLTQPNLAQSQPPAPVP---VTDPSVTMHPAVFLSLPDL-RC : : : ..:::: . : . .: .: : KIAA18 SAPFPFPGGQAADPSVFI-PLLHSQLLQLSRA 10 20 30 60 70 80 90 100 KIAA05 SLLLLVTWVFTPVTTEITSLD-------TENIDEILN---NADVALVNFYADWCRFSQML :. .:. . . .. :: .:..:: .. : :. ::.::: :: . : KIAA18 SMAAWKSWTALRLCATVVVLDMVVCKGFVEDLDESFKENRNDDIWLVDFYAPWCGHCKKL 40 50 60 70 80 90 110 120 130 140 150 160 KIAA05 HPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYR .::..:.. .: . : ...: ..:.::... . :::.::... . .. :: KIAA18 EPIWNEVGLEMK---SIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYN--YR 100 110 120 130 140 170 180 190 200 210 220 KIAA05 GQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANI : :. . .. .. .. :. . . . ... .: .. : .. . . .. .:. KIAA18 GPRTKDDIIEFAHRVSGALIRPLPSQQMFEHMQKRHRVFFVYVGGESPLKEKYID-AASE 150 160 170 180 190 200 230 240 250 260 270 280 KIAA05 LHDDCAFLSAFGDVSKPERYSGDNI----IYKPPGHSAPDMVYLGAMTNFDVTYNWIQDK : :.:: .: :: . .. ..: . . : : .... .. . .:. KIAA18 LIVYTYFFSASEEVV-PEYVTLKEMPAVLVFKDETYFVYDEYEDGDLSSW-INRERFQNY 210 220 230 240 250 260 290 300 310 320 330 340 KIAA05 CVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISE-KGTINFLHA . . . .: :. .: . . . . :. . .::::. . . ..: : KIAA18 -LAMDGFLLYELGDTGKLVALAVIDEKNTSVEHTRLKSIIQEVARDYRDLFHRDFQFGHM 270 280 290 300 310 320 350 360 370 380 390 400 KIAA05 DCDKFRHPLLHIQKT-PADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHR : . . . :: . : :. :..... ..: . : ... . ::. .. .: KIAA18 DGNDYINTLLMDELTVPT---VVVLNTSNQQYFLLD-RQIKNVEDMVQFINNILDGTVEA 330 340 350 360 370 410 420 430 440 450 KIAA05 EFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL KIAA18 QGGDSILQRLKRIVFDAKSTIVSIFKSSPLMGCFLFGLPLGVISIMCYGIYTADTDGGYI 380 390 400 410 420 430 451 residues in 1 query sequences 1987054 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:35 2008 done: Thu Dec 18 15:07:36 2008 Total Scan time: 0.410 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]