hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06480810/chunk_1/iprscan-20080502-06480810.nocrc
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Query sequence: KIAA0570
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase          167.0    1.1e-53   1
PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase          168.8    1.3e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00443.19.fs   1/1    1757  2102 ..     1   318 []   167.0  1.1e-53
PF00443.19.ls   1/1    1757  2102 ..     1   318 []   168.8  1.3e-47

Alignments of top-scoring domains:
PF00443.19.fs: domain 1 of 1, from 1757 to 2102: score 167.0, E = 1.1e-53
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                        ++GL NlG+TCY+ S++Q L++ip+ r+++   +y+       + 
    KIAA0570  1757    CRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYSE------DM 1797 

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy
                   ++k+ ll+   +  + + s+ + + +++  k       t  + +++++++
    KIAA0570  1798 KHKTTLLELQKMFTYLMESEcKAYNPRPFCK-------TYTMDKQPLNTG 1840 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt
                    Q D  EF++ L+ +++ ++++++k                         
    KIAA0570  1841 EQKDMTEFFTDLITKIE-EMSPELK------------------------- 1864 

                RF xxxxxxxxxxxxxxxx                                  
                   rnesiitdlFqGqlks..................................
                      ++++ lF+G  +++  + ++++ +++ ++  + +++  + ++  ++ 
    KIAA0570  1865 ---NTVKSLFGGVITNnvvsldcehvsqtaeefytvrcqvadmkniyesl 1911 

                RF                             xxxxxxxxxxxxxxxxxxxxxx
                   ............................klkikrLPpvLiihLKRFsyng
                   ++ + +++ ++++  ++++++++ + +++  +k+LP +L ++ +R+++n+
    KIAA0570  1912 devtikdtlegdnmytcshcgkkvraekRACFKKLPRILSFNTMRYTFNM 1961 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx xxxxxxxxx
                   etglnkKiddkVefPleLdlssycnaelkekevlrkd.ek.ieklkeerq
                    t++++K ++ ++fPl+Ld+++y  + +  +  +rk+++k+ ++ +++  
    KIAA0570  1962 VTMMKEKVNTHFSFPLRLDMTPYTED-FLMGKSERKEgFKeVSDHSKD-- 2008 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   rdedgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayik
                                        + ++ Y+L++V vH G ++++GHY+++i+
    KIAA0570  2009 ---------------------SESYEYDLIGVTVHTG-TADGGHYYSFIR 2036 

                RF x     xxxxxxxxxxxxxxxxxxxxxxxxx                   
                   k.....kkengkWykfDDekVsevteeevle...................
                   +  ++++++n+kWy+f+D  V++ +  +  ++  +++ ++++ ++ +++ 
    KIAA0570  2037 DivnphAYKNNKWYLFNDAEVKPFDSAQLASecfggemttktydsvtdkf 2086 

                RF       xxxxxxxxxx   
                   ......rsssAYiLFY<-*
                    + + ++++sAY+LFY   
    KIAA0570  2087 mdfsfeKTHSAYMLFY    2102 

PF00443.19.ls: domain 1 of 1, from 1757 to 2102: score 168.8, E = 1.3e-47
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                        ++GL NlG+TCY+ S++Q L++ip+ r+++   +y+       + 
    KIAA0570  1757    CRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYSE------DM 1797 

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy
                   ++k+ ll+   +  + + s+ + + +++  k       t  + +++++++
    KIAA0570  1798 KHKTTLLELQKMFTYLMESEcKAYNPRPFCK-------TYTMDKQPLNTG 1840 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt
                    Q D  EF++ L+ +++ ++++++k                         
    KIAA0570  1841 EQKDMTEFFTDLITKIE-EMSPELK------------------------- 1864 

                RF xxxxxxxxxxxxxxxx                                  
                   rnesiitdlFqGqlks..................................
                      ++++ lF+G  +++  + ++++ +++ ++  + +++  + ++  ++ 
    KIAA0570  1865 ---NTVKSLFGGVITNnvvsldcehvsqtaeefytvrcqvadmkniyesl 1911 

                RF                             xxxxxxxxxxxxxxxxxxxxxx
                   ............................klkikrLPpvLiihLKRFsyng
                   ++ + +++ ++++  ++++++++ + +++  +k+LP +L ++ +R+++n+
    KIAA0570  1912 devtikdtlegdnmytcshcgkkvraekRACFKKLPRILSFNTMRYTFNM 1961 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx xxxxxxxxx
                   etglnkKiddkVefPleLdlssycnaelkekevlrkd.ek.ieklkeerq
                    t++++K ++ ++fPl+Ld+++y  + +  +  +rk+++k+ ++ +++  
    KIAA0570  1962 VTMMKEKVNTHFSFPLRLDMTPYTED-FLMGKSERKEgFKeVSDHSKD-- 2008 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   rdedgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayik
                                        + ++ Y+L++V vH G ++++GHY+++i+
    KIAA0570  2009 ---------------------SESYEYDLIGVTVHTG-TADGGHYYSFIR 2036 

                RF x     xxxxxxxxxxxxxxxxxxxxxxxxx                   
                   k.....kkengkWykfDDekVsevteeevle...................
                   +  ++++++n+kWy+f+D  V++ +  +  ++  +++ ++++ ++ +++ 
    KIAA0570  2037 DivnphAYKNNKWYLFNDAEVKPFDSAQLASecfggemttktydsvtdkf 2086 

                RF       xxxxxxxxxx   
                   ......rsssAYiLFY<-*
                    + + ++++sAY+LFY   
    KIAA0570  2087 mdfsfeKTHSAYMLFY    2102 

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