hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06363018/chunk_1/iprscan-20080502-06363018.nocrc
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Query sequence: KIAA0564
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00327                                                  60.1    2.8e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00327    1/1    1248  1437 ..     1   193 []    60.1  2.8e-13

Alignments of top-scoring domains:
SM00327: domain 1 of 1, from 1248 to 1437: score 60.1, E = 2.8e-13
                   *->plDvvfllDgSgSmg.....gnrfekvkefv.klveqld....gdrv
                      p+ + +++D+SgSm + ++ ++r+e++ e+v +++e++++ +++ ++
    KIAA0564  1248    PKRLRLVVDVSGSMYrfnrmDGRLERTMEAVcMVMEAFEnyeeKFQY 1294 

                   glvqFss..dvrvefpln..sqskdallealaslsykglkdyslgggTnl
                    +v+ s+++    ++p+n+  ++ ++ le+l+ ++    + +++  g ++
    KIAA0564  1295 DIVGHSGdgYNIGLVPMNkiPKDNKQRLEILKTMHA---HSQFCMSGDHT 1341 

                   g.ALqyalenlfsesag.rrgagratkiSnvpkvliliTDGesndggddp
                    ++ ++a+++ + +++++ +             ++i+++D + ++  +++
    KIAA0564  1342 LeGTEHAIKE-IVKEEAdEY-------------FVIVLSDANLSR--YGI 1375 

                   edileaakelkrsgvkvfvigvgnade.elkeiasep.gehvffdvsdve
                    +++ a +  ++  v+ f+i++g+   ++  ++ +  +  + f+ ++d++
    KIAA0564  1376 HPAKFAQILTRDPQVNAFAIFIGS-LGdQATRLQRTLpAGRSFV-AMDTK 1423 

                   dlpslldllidlll<-*
                   d p++l+ ++++ +   
    KIAA0564  1424 DIPQILQQIFTSTM    1437 

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