# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh23589.fasta.huge -Q ../query/KIAA0563.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0563, 1652 aa vs ./tmplib.23663 library 1985853 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.0799+/-0.0108; mu= -14.4809+/- 0.724 mean_var=596.4249+/-147.013, 0's: 0 Z-trim: 13 B-trim: 0 in 0/40 Lambda= 0.052517 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0170 ( 2090 res) ha02399 (2090) 351 43.2 0.00067 >>KIAA0170 ( 2090 res) ha02399 (2090 aa) initn: 192 init1: 93 opt: 351 Z-score: 161.8 bits: 43.2 E(): 0.00067 Smith-Waterman score: 403; 22.752% identity (50.277% similar) in 901 aa overlap (39-880:747-1595) 10 20 30 40 50 60 KIAA05 KGHERLGAARMTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLT :: .: : . : .: . . :. KIAA01 DEPTQAFMLTPPQELGPSHCSFQTTGTLDEPWEVLATQPFCLRESEDSETQPFDTHLEAY 720 730 740 750 760 770 70 80 90 100 110 120 KIAA05 SNPLGPPE--PWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVP . :.::. : ..: : ::: . ..: .. : .. ... . :.:..: . : KIAA01 GPCLSPPRAIPGDQH----P-ESP----VHTEPMGIQGRGRQTVDKVMGIPKETAERVGP 780 790 800 810 820 130 140 150 160 170 180 KIAA05 FLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIH : : : :..: .: .. .:.: : :.: :. ::. KIAA01 ------ERGPLERETEKLLPERQ---TDVTGEEELT----KGKQDREQKQLLAR------ 830 840 850 860 190 200 210 220 230 240 KIAA05 QLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSD-EPPGPSEQVGPSQFHLEPETQNP : :.. ..: .: . :: :.... . . ..:. ::. .: :.. : KIAA01 ---DTQRQESDKNGESASPERDRE-SLKVEIETSEEIQEKQVQKQTLPSK-AFEREVERP 870 880 890 900 910 920 250 260 270 280 290 KIAA05 ETLEDIQSSSLQQEAPAQL----PQLLEEEPSSMQQEAPAL-P-PESSMESLTLPNHEVS . .. . . :....: . : : : .:..:.. : : :: .. . ::. . KIAA01 VANRECDPAELEEKVPKVILERDTQRGEPEGGSQDQKGQASSPTPEPGVGAGDLPGPTSA 930 940 950 960 970 980 300 310 320 330 340 350 KIAA05 VQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQE : : ... : .. . . . . : : ..:. . .. .. :.: KIAA01 PVPSGSQSGGRGSP-VSPRRHQKGLLNCKMPPAE-KASRIRAAEKVSRGDQESPDACLPP 990 1000 1010 1020 1030 1040 360 370 380 390 400 KIAA05 APIEPPVPPMEHELSISEQQ-------QPVQPS--ESSREVESSPTQQETPGQP------ : : :.::.. : :... .:. :: . :..... .: :.: : KIAA01 AVPEAPAPPQKPLNSQSQKHLAPPPLLSPLLPSIKPTVRKTRQDGSQ-EAPEAPLSSELE 1050 1060 1070 1080 1090 1100 410 420 430 440 450 460 KIAA05 PEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLS-GS : : . . ..... :..:. : : .:.: . :: . . :.: : . KIAA01 PFHPKPKIRT--RKSSRMTPFPATSAAPEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKT 1110 1120 1130 1140 1150 470 480 490 500 510 KIAA05 GNDVEP--PAIQHGGPPLLPESSEEAGPLAV--QQETSFQSPE---PINNE-NPSPTQQE . : : : .: . : .:: .. .. ....: ..:: : : .:: . .. KIAA01 PEPVVPTAPELQPSTSTDQPVTSEPTSQVTRGRKSRSSVKTPETVVPTALELQPSTSTDR 1160 1170 1180 1190 1200 1210 520 530 540 550 560 KIAA05 AAAEHPQT-AEEGESSLTHQEAPAQT----PEF-PNVVVAQPPEHSHLTQATVQPLDLGF .. .: . : .:... . ..: . ::. :.. . :: ::: . . KIAA01 PVTSEPTSQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQPVTSEPTYQATRGRKNRSS 1220 1230 1240 1250 1260 1270 570 580 590 600 610 620 KIAA05 TITPESM--TEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQD-QAQHPVSPSVTV . ::: . : :: :. : :. : : :. .. :: . . .. :..: . . KIAA01 VKTPEPVVPTAPELRPS---TSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVPTAPELQI 1280 1290 1300 1310 1320 1330 630 640 650 660 670 KIAA05 QLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLP----HPDQVQTQHS----HLTR . . .::.::.. .: . .. : :.:: :.: : ...:.. .: KIAA01 ST-STDQPVTPKPTSR---TTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPVTPEPTSR 1340 1350 1360 1370 1380 1390 680 690 700 710 720 730 KIAA05 ATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHL-TQATVQ :: . . ::.... . :. :.. : :: : . .:....: . : :: KIAA01 ATRGRKNRSSGKTPETLVPTAPKLEPSTSTDQPVTPEPT-SQATRGRTNRSSVKTPETVV 1400 1410 1420 1430 1440 1450 740 750 760 770 780 KIAA05 PLDLELTITTKPTTEVKPSPT-------TEETSTQLPDLGLAIIPE-PTTETGHSTALEK : :: .:. : : :: :...:.. :. ...: : ... :: KIAA01 PTAPELQPSTSTDQPVTPEPTSQATRGRTDRSSVKTPE---TVVPTAPELQASASTDQPV 1460 1470 1480 1490 1500 790 800 810 820 830 840 KIAA05 TTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNIC :. : .:. ... . : : : . :: : : . :. . : . . :: KIAA01 TSEPT-SRTTRGRKNRSSVKTPET-VVPAAPEL-QPPTSTDRPVTPEPTSRATRGRTNRS 1510 1520 1530 1540 1550 1560 850 860 870 880 890 900 KIAA05 ELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWT . : . . .:.: :. .:::.. KIAA01 SVKTPESIVPIAPELQPSTSRNQLVTPEPTSRATRCRTNRSSVKTPEPVVPTAPEPHPTT 1570 1580 1590 1600 1610 1620 910 920 930 940 950 960 KIAA05 EKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITE KIAA01 STDQPVTPKLTSRATRRKTNRSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQSKT 1630 1640 1650 1660 1670 1680 1652 residues in 1 query sequences 1985853 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:09 2008 done: Thu Dec 18 15:07:10 2008 Total Scan time: 0.890 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]