hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06330605/chunk_1/iprscan-20080502-06330605.nocrc
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Query sequence: KIAA0562
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02985.12.ls HEAT repeat                                     27.1    5.9e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   1/2     529   565 ..     1    36 []    14.1     0.47
PF02985.12.ls   2/2     610   646 ..     1    36 []    13.0        1

Alignments of top-scoring domains:
PF02985.12.ls: domain 1 of 2, from 529 to 565: score 14.1, E = 0.47
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++++++ +p+ll+  +D++++ R +Aa+ + ++a +    
    KIAA0562   529    AhCVERTIPVLLTRTGDSSARLRVTAANFIQEMALFK    565  

PF02985.12.ls: domain 2 of 2, from 610 to 646: score 13.0, E = 1
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        ++d+++ + +++l++ ++eVRe+A++ + ++++++   
    KIAA0562   610    GfTIDNVMKFSVSALEHRVYEVRETAVRIILDMYRQH    646  

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