hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06312872/chunk_1/iprscan-20080502-06312872.nocrc
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Query sequence: KIAA0561
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 345.1    4.6e-99   1
SM00228                                                  65.1    8.9e-15   1
SM00219                                                  -5.5    8.5e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     366   625 ..     1   280 []    -5.5  8.5e-11
SM00220    1/1     366   639 ..     1   231 []   345.1  4.6e-99
SM00228    1/1     957  1037 ..     1    80 []    65.1  8.9e-15

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 366 to 625: score -5.5, E = 8.5e-11
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                       + +k + +Ga+G Vy+ + +++++  A+K++++     +++++   
    KIAA0561   366    FETIKLISNGAYGAVYLVRHRdtrQRFAIKKINKQNlilrnqIQQVF 412  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                    E  i++    ++p +V ++    +          l++vmEy+egGd+  
    KIAA0561   413 VERDILTFA--ENPFVVSMFCSFETR-------RHLCMVMEYVEGGDCAT 453  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                    L++ +p l+++    +        eYL+  ++vHRDL   N L+++ ++
    KIAA0561   454 LLKNMGP-LPVDMARLYFAETVLALEYLHNYGIVHRDLKPDNLLITSLGH 502  

                   vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPir.......WmA
                   +K +DFGLs+ +        ++  Y    +k+++  +  ++  ++++  A
    KIAA0561   503 IKLTDFGLSKIGLMS----MATNLYEGHIEKDARE-FIDKqvcgtpeYIA 547  

                   PEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleyl
                   PE+++   +    D W+ GV+L+E +  + +   +      ++ee++ ++
    KIAA0561   548 PEVIFRQGYGKPVDWWAMGVVLYEFLVGCVPFFGD------TPEELFGQV 591  

                   kkGyRlpkPendlpiSsvtCPdelYd.lMlqCWaedPedRPtFselverl
                    + + + +  +       ++ ++  ++l+++  +  P dR         l
    KIAA0561   592 VSDEIMWPEGD-------EALPADAQdLITRLLRQSPLDR---------L 625  

                   <-*
                      
    KIAA0561     -     -    

SM00220: domain 1 of 1, from 366 to 639: score 345.1, E = 4.6e-99
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      +e +k++  Ga+G Vyl+r+++t +++AiK+i++++   +++ +++ 
    KIAA0561   366    FETIKLISNGAYGAVYLVRHRDTRQRFAIKKINkqnlilrnqiQQVF 412  

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                    E++iL     P++V ++ +fe++ +l++VmEy+eG  Gd  +llk++g+
    KIAA0561   413 VERDILTFaENPFVVSMFCSFETrRHLCMVMEYVEG--GDCATLLKNMGP 460  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         l+ ++ar yf+++++aLeYLH+ gI+HRDLKP+N+L++s +h+K
    KIAA0561   461 ------LPVdMARLYFAETVLALEYLHNYGIVHRDLKPDNLLITSlgHIK 504  

                   laDFGlArql......................ttfvGTpeYmAPEvl...
                   l+DFGl+++   +  ++  +++ +++ ++  ++ ++GTpeY+APEv+ ++
    KIAA0561   505 LTDFGLSKIGlmsmatnlyeghiekdarefidKQVCGTPEYIAPEVIfrq 554  

                   gYgkpavDiWSlGcilyElltGkpPFp..qldlifkkig...........
                   gYgk +vD+W+ G++lyE+l+G+ PF +++++++f ++++++  ++++++
    KIAA0561   555 GYGK-PVDWWAMGVVLYEFLVGCVPFFgdTPEELFGQVVsdeimwpegde 603  

                   ..SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                     + +a dLi +lL+  P +Rl+ +   e    +k+HPff   
    KIAA0561   604 alPADAQDLITRLLRQSPLDRLGTgGTHE----VKQHPFF    639  

SM00228: domain 1 of 1, from 957 to 1037: score 65.1, E = 8.9e-15
                   *->gglGfsivg.............gifvssvvpGspAakaGrkslglLk
                      + +Gfs++  +   ++++  + +++v sv++GspA  aG      L+
    KIAA0561   957    KKYGFSLRAirvymgdsdvytvHHVVWSVEDGSPAQEAG------LR 997  

                   vGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +GD I+ +NG +sv gl h ++v+ll k+g+     k++L     +   
    KIAA0561   998 AGDLITHING-ESVLGLVHMDVVELLLKSGN-----KISLRTTALE    1037 

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