hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06312872/chunk_1/iprscan-20080502-06312872.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0561 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08926.1.ls Domain of unknown function (DUF1908) 712.2 3.4e-211 1 PF08926.1.fs Domain of unknown function (DUF1908) 710.3 1.3e-210 1 PF00069.15.ls Protein kinase domain 283.5 3.7e-82 1 PF00069.15.fs Protein kinase domain 281.4 1.6e-81 2 PF07714.7.fs Protein tyrosine kinase 37.8 7e-11 2 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 32.5 1.8e-08 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 30.8 4.4e-06 1 PF00433.14.ls Protein kinase C terminal domain 15.7 0.006 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08926.1.fs 1/1 55 331 .. 1 317 [] 710.3 1.3e-210 PF08926.1.ls 1/1 55 331 .. 1 317 [] 712.2 3.4e-211 PF00069.15.ls 1/1 366 639 .. 1 287 [] 283.5 3.7e-82 PF00069.15.fs 1/2 366 512 .. 1 161 [. 166.1 4.4e-47 PF07714.7.fs 1/2 438 512 .. 81 161 .. 32.8 2e-09 PF00069.15.fs 2/2 537 639 .. 170 287 .] 115.3 1.2e-32 PF00433.14.ls 1/1 657 702 .. 1 47 [] 15.7 0.006 PF00595.14.ls 1/1 949 1034 .. 1 86 [] 30.8 4.4e-06 PF00595.14.fs 1/1 984 1034 .. 33 86 .] 32.5 1.8e-08 Alignments of top-scoring domains: PF08926.1.fs: domain 1 of 1, from 55 to 331: score 710.3, E = 1.3e-210 *->sSpldSprnfststsanFsfarssslradraDgRRWSLASLPStSGY sSpldSprnfs+++++nF+far raDgRRWSLASLPS SGY KIAA0561 55 SSPLDSPRNFSAASALNFPFAR-------RADGRRWSLASLPS-SGY 93 GTpgntpsStvSSssSSqErLhqmLpyqptsdelhflskhFrSteSvtde GT ntpsSt+SSssSS+ErLhq Lp+qpt+delhflskhFrS+e+v de KIAA0561 94 GT--NTPSSTLSSSSSSRERLHQ-LPFQPTPDELHFLSKHFRSSENVLDE 140 dghrspavqnaflnRPRSRSLtSPgrslsefdnEiVmmnhVYkERFPkAt +g+rsp++ RPRSRSL SPgr++++fdnEiVmmnhVY+ERFPkAt KIAA0561 141 EGGRSPRL------RPRSRSL-SPGRATGTFDNEIVMMNHVYRERFPKAT 183 aQMEerLkeiiteysPvmrsrrdtvLpaesyadrsllrlLADGvlgFihH aQME+rL+e++t+y+P +++L+ LADGvlgFihH KIAA0561 184 AQMEGRLQEFLTAYAP------GARLA------------LADGVLGFIHH 215 QivELArDCLdKSkdgLiTsrYFlELqekLEklLqeAyerseseevafis QivELArDCL+KS ++L+TsrYFlE+qekLE+lLq+A+ers+seev+fi+ KIAA0561 216 QIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIV 265 kLVkKlLiiisRPARLLECLEFDPeeFYhLLEaAEGvakegqGikTarvp +LV+KlLiiisRPARLLECLEFDPeeFYhLLEaAEG+a+egqGikT KIAA0561 266 QLVRKLLIIISRPARLLECLEFDPEEFYHLLEAAEGHAREGQGIKT---- 311 DiPrYIIsqLGLtrDPLeem<-* D+P+YII+qLGL++DPLeem KIAA0561 312 DLPQYIIGQLGLAKDPLEEM 331 PF08926.1.ls: domain 1 of 1, from 55 to 331: score 712.2, E = 3.4e-211 *->sSpldSprnfststsanFsfarssslradraDgRRWSLASLPStSGY sSpldSprnfs+++++nF+far raDgRRWSLASLPS SGY KIAA0561 55 SSPLDSPRNFSAASALNFPFAR-------RADGRRWSLASLPS-SGY 93 GTpgntpsStvSSssSSqErLhqmLpyqptsdelhflskhFrSteSvtde GT ntpsSt+SSssSS+ErLhq Lp+qpt+delhflskhFrS+e+v de KIAA0561 94 GT--NTPSSTLSSSSSSRERLHQ-LPFQPTPDELHFLSKHFRSSENVLDE 140 dghrspavqnaflnRPRSRSLtSPgrslsefdnEiVmmnhVYkERFPkAt +g+rsp++ RPRSRSL SPgr++++fdnEiVmmnhVY+ERFPkAt KIAA0561 141 EGGRSPRL------RPRSRSL-SPGRATGTFDNEIVMMNHVYRERFPKAT 183 aQMEerLkeiiteysPvmrsrrdtvLpaesyadrsllrlLADGvlgFihH aQME+rL+e++t+y+P +++L+ LADGvlgFihH KIAA0561 184 AQMEGRLQEFLTAYAP------GARLA------------LADGVLGFIHH 215 QivELArDCLdKSkdgLiTsrYFlELqekLEklLqeAyerseseevafis QivELArDCL+KS ++L+TsrYFlE+qekLE+lLq+A+ers+seev+fi+ KIAA0561 216 QIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIV 265 kLVkKlLiiisRPARLLECLEFDPeeFYhLLEaAEGvakegqGikTarvp +LV+KlLiiisRPARLLECLEFDPeeFYhLLEaAEG+a+egqGikT KIAA0561 266 QLVRKLLIIISRPARLLECLEFDPEEFYHLLEAAEGHAREGQGIKT---- 311 DiPrYIIsqLGLtrDPLeem<-* D+P+YII+qLGL++DPLeem KIAA0561 312 DLPQYIIGQLGLAKDPLEEM 331 PF00069.15.ls: domain 1 of 1, from 366 to 639: score 283.5, E = 3.7e-82 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +e+++ + G++G Vy+ +h++t++++A+K+i+k++ + ++ ++ + KIAA0561 366 FETIKLISNGAYGAVYLVRHRDTRQRFAIKKINKQnLILRNQIQQVF 412 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls E il p++v ++++fe+++hl++V+Ey+egG d ++l+ KIAA0561 413 V--ERDILTFAENPFVVSMFCSFETRRHLCMVMEYVEGG----DCATLLK 456 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng + gpl + d a+ ++ +++ +leYLH+ gi+HRDLKP+N+L+ + g KIAA0561 457 ---NMGPL--PVDMARLYFAETVLALEYLHNYGIVHRDLKPDNLLITSLG 501 vvdaflKiaDFGlAkkls............t.sss.l..ttfvGTpwYmA ++ K++DFGl+k + ++ +++ ++ +++ ++ ++GTp+Y+A KIAA0561 502 HI----KLTDFGLSKIGLmsmatnlyeghiEkDAReFidKQVCGTPEYIA 547 PEvllggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirki PEv+ ++gyg++vD+W++Gv+lye+l G PF g+ ++ +l+ ++ KIAA0561 548 PEVIF-RQGYGKPVDWWAMGVVLYEFLVGCVPFFGD-----TPEELFGQV 591 lgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt... + ++++++ + +l+ +a+dLi+++L++ P +Rl++++ KIAA0561 592 VSDEIMWPEGDE------------ALPADAQDLITRLLRQSPLDRLGtgg 629 aeeilqHPwf<-* +e++qHP+f KIAA0561 630 THEVKQHPFF 639 PF00069.15.fs: domain 1 of 2, from 366 to 512: score 166.1, E = 4.4e-47 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +e+++ + G++G Vy+ +h++t++++A+K+i+k++ + ++ ++ + KIAA0561 366 FETIKLISNGAYGAVYLVRHRDTRQRFAIKKINKQnLILRNQIQQVF 412 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls E il p++v ++++fe+++hl++V+Ey+egG d ++l+ KIAA0561 413 V--ERDILTFAENPFVVSMFCSFETRRHLCMVMEYVEGG----DCATLLK 456 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng + gpl + d a+ ++ +++ +leYLH+ gi+HRDLKP+N+L+ + g KIAA0561 457 ---NMGPL--PVDMARLYFAETVLALEYLHNYGIVHRDLKPDNLLITSLG 501 vvdaflKiaDFGlAk<-* ++ K++DFGl+k KIAA0561 502 HI----KLTDFGLSK 512 PF07714.7.fs: domain 1 of 2, from 438 to 512: score 32.8, E = 2e-09 *->ggpglyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMe + l++V+Ey+egGd + L++ +pL++ + + ++ ++e KIAA0561 438 H---LCMVMEYVEGGDCATLLKNM---GPLPVDMARLYFAETVLALE 478 YLesknfvHRDLAARNcLVsenlvVKIsDFGLaR<-* YL++ ++vHRDL N L+++ +++K +DFGL++ KIAA0561 479 YLHNYGIVHRDLKPDNLLITSLGHIKLTDFGLSK 512 PF00069.15.fs: domain 2 of 2, from 537 to 639: score 115.3, E = 1.2e-32 *->ttfvGTpwYmAPEvllggngygtkvDvWSlGvilyelltGkpPFsge + ++GTp+Y+APEv+ ++gyg++vD+W++Gv+lye+l G PF g+ KIAA0561 537 KQVCGTPEYIAPEVIF-RQGYGKPVDWWAMGVVLYEFLVGCVPFFGD 582 vqdsldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikk ++ +l+ ++ + ++++++ + +l+ +a+dLi++ KIAA0561 583 -----TPEELFGQVVSDEIMWPEGDE------------ALPADAQDLITR 615 cLnkDPskRlt...aeeilqHPwf<-* +L++ P +Rl++++ +e++qHP+f KIAA0561 616 LLRQSPLDRLGtggTHEVKQHPFF 639 PF00433.14.ls: domain 1 of 1, from 657 to 702: score 15.7, E = 0.006 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFrGFtYvnp +++ ++DTs+FD+ +++ + + d+++ ++ e +F+ ++ KIAA0561 657 QLEAEDDTSYFDTRSERYRHLGS--EDDEtNDEESSTEIPQFSSCSH 701 e<-* KIAA0561 702 R 702 PF00595.14.ls: domain 1 of 1, from 949 to 1034: score 30.8, E = 4.4e-06 *->evtlekedkrgglGfsikggsdkga.....dkgifvsevlpGsgaAe ++++ ++ + Gfs++ ++++ + +v +v G ++A+ KIAA0561 949 PIVIHS--SGKKYGFSLRAIRVYMGdsdvyTVHHVVWSVEDG-SPAQ 992 agGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +G L+aGD I+ +NG+++ +l h+++v++l +sg+ +++L KIAA0561 993 EAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGN-KISLRTT 1034 PF00595.14.fs: domain 1 of 1, from 984 to 1034: score 32.5, E = 1.8e-08 *->evlpGsgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggs +v G ++A+ +G L+aGD I+ +NG+++ +l h+++v++l +sg+ KIAA0561 984 SVEDG-SPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGN- 1027 evtLtvl<-* +++L KIAA0561 1028 KISLRTT 1034 //