hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06280440/chunk_1/iprscan-20080502-06280440.nocrc
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Query sequence: KIAA0559
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                  88.5      8e-22   1
SM00228                                                  64.4    1.5e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1     788   867 ..     1    80 []    64.4  1.5e-14
SM00239    1/1     985  1099 ..     1    92 []    88.5    8e-22

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 788 to 867: score 64.4, E = 1.5e-14
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                      +glG++ivg+++ ++++++ g+++++++pG+ A++ G+     L +G
    KIAA0559   788    NGLGIRIVGgkeipghsgeiGAYIAKILPGGSAEQTGK-----LMEG 829  

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    ++le+NG ++++++t+ee++ ++ + +g     + ++ v+ +    
    KIAA0559   830 MQVLEWNG-IPLTSKTYEEVQSIISQQSG-----EAEICVRLDL    867  

SM00239: domain 1 of 1, from 985 to 1099: score 88.5, E = 8e-22
                   *->tLtvkiisArnLp........DPYVkvs...................
                       L ++i++ArnL ++++++ +DP+Vkv+  +++++    ++ +   +
    KIAA0559   985    NLIIHILQARNLVprdnngysDPFVKVYllpgrgqvmvvqnasaeyk 1031 

                   .kTkvvkktlsgfNPvWnEesetFeFevpp......s.LeieVyDk....
                   ++Tk+v+k+l   NP+Wn+   t+ ++ ++ ++ ++++Le++V+D+++ +
    KIAA0559  1032 rRTKHVQKSL---NPEWNQ---TVIYKSISmeqlkkKtLEVTVWDYdrfs 1075 

                   ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++df+G+v i+              ls+  + + ++++   
    KIAA0559  1076 snDFLGEVLID--------------LSSTShLDNTpRW    1099 

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