hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06193139/chunk_1/iprscan-20080502-06193139.nocrc
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Query sequence: KIAA0554
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00055                                                  86.1    4.1e-21   1
SM00326                                                  69.1    5.6e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00055    1/1      58   151 ..     1   103 []    86.1  4.1e-21
SM00326    1/1     610   667 ..     1    58 []    69.1  5.6e-16

Alignments of top-scoring domains:
SM00055: domain 1 of 1, from 58 to 151: score 86.1, E = 4.1e-21
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      m+++ el  +d+f+ L++++++g+  le ++kf++eR +iE +YAk+
    KIAA0554    58    MSWGTEL--WDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQ 102  

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   L  lskky++kk       ++ e e ++ s  k++ + l e+++ a +h+
    KIAA0554   103 LRNLSKKYQPKK------NSKEEEEYKYTSC-KAFISNLNEMNDYAGQHE 145  

                   qlsedL<-*
                    +se+    
    KIAA0554   146 VISENM    151  

SM00326: domain 1 of 1, from 610 to 667: score 69.1, E = 5.6e-16
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke
                      ++++AlY +e+qne+ +s+ +G++++v+e++++dgW + ++n   +e
    KIAA0554   610    GTCKALYTFEGQNEGTISVVEGETLYVIEEDkGDGWTRIRRN-EDEE 655  

                   GlfPsnYVeeie<-*
                   G++P++YVe++    
    KIAA0554   656 GYVPTSYVEVCL    667  

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